View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9137_low_9 (Length: 242)
Name: NF9137_low_9
Description: NF9137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9137_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 36389207 - 36389398
Alignment:
| Q |
13 |
ggtccgtgcacaagctaacttttacaatctacacggaagtgactatggatcaagaatttttatttccggtgaaagttttttc--gtttacacctcctcca |
110 |
Q |
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| T |
36389207 |
ggtccgtgcacaagctaacttttacaatctacacggaagtgactatggatcatgaatttttatttccggtgaacgttttttctcgtttacacctcctcca |
36389306 |
T |
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| Q |
111 |
tctctattaggtattgattacaatatcttgcaggttagaaattatatttattttgtccaagtgtttgtaaattttatcatttggtaatctat |
202 |
Q |
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| T |
36389307 |
tctctgttaggtattgattacaatatcttgcaggttagaaattatatttattttgtccaagtgtttgtaaattttatcatttggtaatctat |
36389398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 36391992 - 36391798
Alignment:
| Q |
13 |
ggtccgtgcacaagctaacttttacaatctacacggaagtgactatggatcaagaatttttatttccggtgaaagttttttcgtttacacctcctccatc |
112 |
Q |
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| T |
36391992 |
ggtccgtgcacaagctaacttttacaatctacacagaagtgattgtggatcatgaatttttatttctggtgaacacttttccatttacacctcctccatc |
36391893 |
T |
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| Q |
113 |
tctattaggtattgattacaa-------tatcttgcaggttagaaattatatttattttgtccaagtgtttgtaaattttatcatttggtaatct |
200 |
Q |
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| T |
36391892 |
tctgttcggtattgattacaataccgattatcttgcaggttagaaattatatttattttgtctaagtgtttgtaaattttatcatttggtaatct |
36391798 |
T |
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