View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9138_high_3 (Length: 486)

Name: NF9138_high_3
Description: NF9138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9138_high_3
NF9138_high_3
[»] chr5 (1 HSPs)
chr5 (1-468)||(26358399-26358863)
[»] chr4 (3 HSPs)
chr4 (143-455)||(53328594-53328906)
chr4 (143-440)||(22898448-22898745)
chr4 (143-440)||(22950116-22950413)
[»] chr2 (3 HSPs)
chr2 (98-252)||(30012096-30012255)
chr2 (27-131)||(30012265-30012366)
chr2 (143-440)||(41027467-41027764)
[»] chr7 (2 HSPs)
chr7 (145-440)||(39954837-39955132)
chr7 (154-266)||(10575456-10575568)
[»] chr3 (5 HSPs)
chr3 (157-424)||(21584601-21584868)
chr3 (157-332)||(31825561-31825736)
chr3 (225-395)||(24919958-24920128)
chr3 (154-424)||(24981957-24982227)
chr3 (226-392)||(24923533-24923699)
[»] chr8 (1 HSPs)
chr8 (166-215)||(14261045-14261094)


Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 26358399 - 26358863
Alignment:
Q  1 ttcaataaattaacaaagacgaaaggaacaattatatattggcaagagttagaaaagtgatacagtactaaaagattcaacaagctattacgactaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26358399 ttcaataaattaacaaagacgaaaggaacaattatatattggcaagagttagaaaagtgatacagtactaaaagattcaacaagctataacgactaatta 26358498  T
Q  101 ctactaattcacttttcttactactaattaacaataccctaacctaacccccaaaaccataaagggtccttccttgcctcttgagcgcataaacaacatc 200  Q
    ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26358499 ct---aattcacttttcttactactaattaacaataccctaacctaacccccaaaaccataaagggtccttccttgcctcttgagcgcataaacaacatc 26358595  T
Q  201 catagcagtaaccgttttgcggcgagcgtgttcagtgtaagtgacagcatcacgaataacattctcaagaaatatcttgagaacaccacgagtttcttca 300  Q
    |||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26358596 catagcagtaactgttttgcgacgagcatgttcagtgtaagtgacagcatcacgaataacattctcaagaaatatcttgagaacaccacgagtttcttca 26358695  T
Q  301 tagatgagaccactgatacgctttacaccaccacgccttgcaagacgacggattgctggtttggtaattccctgaatgttatctcgaagaactttgcggt 400  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| |    
T  26358696 tagatcagaccactgatacgttttacaccaccacgccttgcaagacgacgaatcgcgggtttggtaattccctgaatgttatctcgaagaactttgcgat 26358795  T
Q  401 gacgcttagcaccaccctttcctaaaccttttcctcctttacctcttcctgacattgttgattgcaag 468  Q
    ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  26358796 gacgctttgcaccaccctttcctaaaccctttcctccttttcctcttcctgacattgttgattgcaag 26358863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 153; Significance: 7e-81; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 143 - 455
Target Start/End: Complemental strand, 53328906 - 53328594
Alignment:
Q  143 cctaacccccaaaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaaccgttttgcggcgagcgtgttcagtgtaagt 242  Q
    |||||||||| ||||| ||||| |||||||| ||||||||||| || |||||||||||||| |||||||| || || |||||||| || || ||||| ||    
T  53328906 cctaacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgt 53328807  T
Q  243 gacagcatcacgaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatgagaccactgatacgctttacaccaccacgccttgca 342  Q
    ||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |  |||||||||||||| ||||||||||| |||||     
T  53328806 gacagcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcg 53328707  T
Q  343 agacgacggattgctggtttggtaattccctgaatgttatctcgaagaactttgcggtgacgcttagcaccaccctttcctaaaccttttcctcctttac 442  Q
    |||||||| || || || || || |||||||| |||||||| || ||||| || ||||| || || || ||||||||||||||||| ||||||||||| |    
T  53328706 agacgacgaatcgcaggctttgtgattccctggatgttatcgcgcagaaccttacggtgtcgtttcgctccaccctttcctaaaccctttcctcctttgc 53328607  T
Q  443 ctcttcctgacat 455  Q
    |||||||||||||    
T  53328606 ctcttcctgacat 53328594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 143 - 440
Target Start/End: Complemental strand, 22898745 - 22898448
Alignment:
Q  143 cctaacccccaaaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaaccgttttgcggcgagcgtgttcagtgtaagt 242  Q
    ||||||||||||| || |||||||| ||||| || |||||||| |||||||| |||||||||||||||||||| || |  | |||||| |||||||||||    
T  22898745 cctaacccccaaatccgtaaagggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagt 22898646  T
Q  243 gacagcatcacgaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatgagaccactgatacgctttacaccaccacgccttgca 342  Q
     |||||||| | ||| |||||||| | ||||||||| |  || ||||| || || ||||| || | ||||||||||||||| || || || |  |  |||    
T  22898645 cacagcatctctaatcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagca 22898546  T
Q  343 agacgacggattgctggtttggtaattccctgaatgttatctcgaagaactttgcggtgacgcttagcaccaccctttcctaaaccttttcctccttt 440  Q
    |||||||| || ||||| || || |||||||| ||||| || ||||| || || || || ||||| || ||||||||||| ||||| ||||| |||||    
T  22898545 agacgacgaatcgctggctttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcccaaaccctttccaccttt 22898448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 143 - 440
Target Start/End: Complemental strand, 22950413 - 22950116
Alignment:
Q  143 cctaacccccaaaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaaccgttttgcggcgagcgtgttcagtgtaagt 242  Q
    ||||||||||||| || |||||||| ||||| || |||||||| |||||||| |||||||||||||||||||| || |  | |||||| |||||||||||    
T  22950413 cctaacccccaaatccgtaaagggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagt 22950314  T
Q  243 gacagcatcacgaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatgagaccactgatacgctttacaccaccacgccttgca 342  Q
     |||||||| | ||| |||||||| | ||||||||| |  || ||||| || || ||||| || | ||||||||||||||| || || || |  |  |||    
T  22950313 cacagcatctctaatcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagca 22950214  T
Q  343 agacgacggattgctggtttggtaattccctgaatgttatctcgaagaactttgcggtgacgcttagcaccaccctttcctaaaccttttcctccttt 440  Q
    |||||||| || ||||| || || |||||||| ||||| || ||||| || || || || ||||| || ||||||||||| ||||| ||||| |||||    
T  22950213 agacgacgaatcgctggctttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcccaaaccctttccaccttt 22950116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 98 - 252
Target Start/End: Complemental strand, 30012255 - 30012096
Alignment:
Q  98 ttactactaattcacttttcttactactaattaaca-----ataccctaacctaacccccaaaaccataaagggtccttccttgcctcttgagcgcataa 192  Q
    ||||||||||||||||||||||||||||||||||||     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30012255 ttactactaattcacttttcttactactaattaacatgacaataccctaacctaacacccaaaaccataaagggtccttccttgcctcttgagcgcataa 30012156  T
Q  193 acaacatccatagcagtaaccgttttgcggcgagcgtgttcagtgtaagtgacagcatca 252  Q
    || |||||||||||||| || || ||||| |||||||||||||||||||| |||||||||    
T  30012155 accacatccatagcagtcactgtcttgcgacgagcgtgttcagtgtaagtaacagcatca 30012096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 30012366 - 30012265
Alignment:
Q  27 aacaattatatattggcaagagttagaaaagtgatacagtactaaaagattcaacaagctattacgactaattactactaattcacttttcttactacta 126  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||   ||||||||||||||||||||||||    
T  30012366 aacaattatatattgccaagagttagaaaagtgatacaatactaaaagattcatgaagttattacgactaatt---actaattcacttttcttactacta 30012270  T
Q  127 attaa 131  Q
    |||||    
T  30012269 attaa 30012265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 143 - 440
Target Start/End: Complemental strand, 41027764 - 41027467
Alignment:
Q  143 cctaacccccaaaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaaccgttttgcggcgagcgtgttcagtgtaagt 242  Q
    ||||||||||||| |||||||| ||||||||||| ||||| |  |||||||||||||||||||||||||| || || |  | |||||| || ||||||||    
T  41027764 cctaacccccaaatccataaagagtccttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagt 41027665  T
Q  243 gacagcatcacgaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatgagaccactgatacgctttacaccaccacgccttgca 342  Q
     ||||||||||||||||||||||| | ||| ||||| |  || ||||| || ||||| ||||| | ||| || |||||||| || || || |  | |||     
T  41027664 aacagcatcacgaataacattctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgcc 41027565  T
Q  343 agacgacggattgctggtttggtaattccctgaatgttatctcgaagaactttgcggtgacgcttagcaccaccctttcctaaaccttttcctccttt 440  Q
    | |||||| || || || || |||||||| ||||||||||| ||||| || || ||||| || || || || |||||||| || || ||||| |||||    
T  41027564 aaacgacgaatcgcaggcttcgtaattccttgaatgttatcacgaagcaccttacggtgtcgttttgctcctccctttcccaatccctttccaccttt 41027467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 145 - 440
Target Start/End: Original strand, 39954837 - 39955132
Alignment:
Q  145 taacccccaaaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaaccgttttgcggcgagcgtgttcagtgtaagtga 244  Q
    ||||| || ||||| || || |||||||| ||||||||||| ||||| ||||||||||| || ||||| ||||| |  | ||| || ||||||||||| |    
T  39954837 taaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaa 39954936  T
Q  245 cagcatcacgaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatgagaccactgatacgctttacaccaccacgccttgcaag 344  Q
    ||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||| | ||| ||||||||||||||||||||    
T  39954937 cagcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccaccacgccttgcaag 39955036  T
Q  345 acgacggattgctggtttggtaattccctgaatgttatctcgaagaactttgcggtgacgcttagcaccaccctttcctaaaccttttcctccttt 440  Q
    |||||| || || || ||||| || || || ||||| || |||||||| || | ||| | ||| || || |||||||| || || |||||||||||    
T  39955037 acgacgaatcgcaggcttggttatgccttggatgttgtcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttt 39955132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 10575568 - 10575456
Alignment:
Q  154 aaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaaccgttttgcggcgagcgtgttcagtgtaagtgacagcatcac 253  Q
    |||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| || ||||| |  |  || || ||||||||||| |||||||| |    
T  10575568 aaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaagtaacagcatctc 10575469  T
Q  254 gaataacattctc 266  Q
      |||||||||||    
T  10575468 ttataacattctc 10575456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 157 - 424
Target Start/End: Original strand, 21584601 - 21584868
Alignment:
Q  157 ccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaaccgttttgcggcgagcgtgttcagtgtaagtgacagcatcacgaa 256  Q
    |||||||| || |||||||||||||| |  ||||||||||||||||||||||| || || || |  |  || || |||||||| || || ||||||||||    
T  21584601 ccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtgtacgtaaccgcatcacgaa 21584700  T
Q  257 taacattctc-aagaaatatcttgagaacaccacgagtttcttcatagatgagaccactgatacgctttacaccaccacgccttgcaagacgacggattg 355  Q
    | |||||||| |||||| ||||| ||||| || |  ||||| ||||| || | ||||||||| | ||| |||||||| |  || || |  ||||| || |    
T  21584701 tcacattctccaagaaa-atcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttctcgccaatcgacgaatcg 21584799  T
Q  356 ctggtttggtaattccctgaatgttatctcgaagaactttgcggtgacgcttagcaccaccctttccta 424  Q
    |||| ||||| ||||||||||||||||| ||||||||||| | ||| | ||| ||||| ||||||||||    
T  21584800 ctggcttggtgattccctgaatgttatcacgaagaactttcctgtgtctctttgcacctccctttccta 21584868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 332
Target Start/End: Original strand, 31825561 - 31825736
Alignment:
Q  157 ccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaaccgttttgcggcgagcgtgttcagtgtaagtgacagcatcacgaa 256  Q
    ||||| ||||| ||||| |||||||| |  ||||| ||||||||||| || ||||| || || |  | |||||| |||||||| ||||| |||||||| |    
T  31825561 ccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtgaccgcatcacgga 31825660  T
Q  257 taacattctcaagaaatatcttgagaacaccacgagtttcttcatagatgagaccactgatacgctttacaccacc 332  Q
    | |||||||| |  || ||||| |  ||||| | ||||||||||||||| | ||||||||| | ||| ||||||||    
T  31825661 tgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacaccacc 31825736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 225 - 395
Target Start/End: Original strand, 24919958 - 24920128
Alignment:
Q  225 agcgtgttcagtgtaagtgacagcatcacgaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatgagaccactgatacgcttt 324  Q
    |||||| |||||||| || |||||||||||||| |||||||| |  || ||||| |  ||||| |  |||||||||||||| | ||| ||||| | |||     
T  24919958 agcgtgctcagtgtatgtcacagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttc 24920057  T
Q  325 acaccaccacgccttgcaagacgacggattgctggtttggtaattccctgaatgttatctcgaagaacttt 395  Q
    |||||||| |  ||||| |  ||||| ||||| || ||||| || ||||| |||||||| |||||||||||    
T  24920058 acaccacctcttcttgccaatcgacgaattgcaggcttggtgataccctggatgttatcacgaagaacttt 24920128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 424
Target Start/End: Complemental strand, 24982227 - 24981957
Alignment:
Q  154 aaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaaccgttttgcggcgagcgtgttcagtgtaagtgacagcatcac 253  Q
    |||||||| ||||| |||||||| ||||| |  ||||| ||||||||||| || ||||| || || |  | |||||| |||||||| || || |||||||    
T  24982227 aaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcac 24982128  T
Q  254 gaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatgagaccactgatacgctttacaccaccacgccttgcaagacgacggat 353  Q
    | || |||||||| |  || ||||| |  ||||| |  ||||||||||| || | ||||||||| | ||| |||||||| |  ||||| |  ||||| ||    
T  24982127 ggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaat 24982028  T
Q  354 tgctggtttggtaattccctgaatgttatctcgaagaactttgcggtgacgcttagcaccaccctttccta 424  Q
     || || ||||| || ||||| |||||||| ||||||||||| |  || | ||| ||||| ||||||||||    
T  24982027 agcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctccctttccta 24981957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 392
Target Start/End: Original strand, 24923533 - 24923699
Alignment:
Q  226 gcgtgttcagtgtaagtgacagcatcacgaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatgagaccactgatacgcttta 325  Q
    ||||| |||||||| || |||||||||||||| |||||||| |  || ||||| |  ||||| |  |||||||||||||| | ||||||||| | ||| |    
T  24923533 gcgtgctcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaa 24923632  T
Q  326 caccaccacgccttgcaagacgacggattgctggtttggtaattccctgaatgttatctcgaagaac 392  Q
    ||||||| |  ||||| |  ||||| || || || ||||| || ||||| |||||||| ||||||||    
T  24923633 caccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaac 24923699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 14261045 - 14261094
Alignment:
Q  166 gtccttccttgcctcttgagcgcataaacaacatccatagcagtaaccgt 215  Q
    ||||||||||| ||||| | ||||||||||||||||||||||||||||||    
T  14261045 gtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgt 14261094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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