View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9138_high_4 (Length: 478)
Name: NF9138_high_4
Description: NF9138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9138_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 23 - 387
Target Start/End: Original strand, 29647046 - 29647410
Alignment:
| Q |
23 |
atatatgagatcataaaggtacaaattatgttttcaccctactttactcctttgtagtgaaatataagaaaaatgagcaacatggttgaatatggcaagc |
122 |
Q |
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| T |
29647046 |
atatatgagatcataaaggtacaaattatgttttcaccctactttactcctttgtagtgaaagataagaaaaatgagcaacatggttgaatatggcaagc |
29647145 |
T |
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| Q |
123 |
tacaacaaatgttgaggggtcatttggagggaaaacataacgaaatggaagtctaaattctagagagagggctcgtgttgcatctaatacacatatggaa |
222 |
Q |
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| T |
29647146 |
tacaacaaatgttgaggggtcatttggagggaaaacataacgaaatggaagtctaaattctagagagagggctcgtgttgcatctaatacacatatggaa |
29647245 |
T |
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| Q |
223 |
gatattagaaaccttgtgtttccccttttaccaagcacgttggtggaatgacacggttgtgccaatcacggtttggttgagggtatacctctataggtct |
322 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29647246 |
aatattagaaaacttgtgtttccccttttaccaagcacgttggtggaatgacacggttgtgccaatcacggttgggttgagggtatacctctataggtct |
29647345 |
T |
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| Q |
323 |
ttcgtagttaaaacaaaggtcttattgaaaattttgtaaaaatgaaaccaagtttccaaagtgtt |
387 |
Q |
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| T |
29647346 |
ttcgtagttaaaacaaaggtcttgttgaaaattttgtaaaaatgaaaccaagtttccaaagtgtt |
29647410 |
T |
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