View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9138_low_11 (Length: 449)

Name: NF9138_low_11
Description: NF9138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9138_low_11
NF9138_low_11
[»] chr3 (7 HSPs)
chr3 (19-439)||(7622843-7623262)
chr3 (40-154)||(7660366-7660486)
chr3 (370-422)||(40557620-40557671)
chr3 (309-343)||(14271923-14271957)
chr3 (309-343)||(44953157-44953191)
chr3 (369-402)||(43774191-43774224)
chr3 (307-343)||(55195855-55195891)
[»] chr5 (4 HSPs)
chr5 (302-402)||(9963422-9963522)
chr5 (369-402)||(3102183-3102216)
chr5 (306-343)||(13754071-13754108)
chr5 (377-417)||(26409246-26409285)
[»] chr4 (6 HSPs)
chr4 (296-343)||(22478723-22478770)
chr4 (369-402)||(9084765-9084798)
chr4 (369-402)||(31480277-31480310)
chr4 (369-402)||(36008281-36008314)
chr4 (369-402)||(48512205-48512238)
chr4 (369-402)||(56531292-56531325)
[»] chr6 (3 HSPs)
chr6 (369-419)||(28970158-28970207)
chr6 (369-402)||(2945602-2945635)
chr6 (369-398)||(4078672-4078701)
[»] scaffold2098 (1 HSPs)
scaffold2098 (369-402)||(669-702)
[»] chr7 (3 HSPs)
chr7 (369-402)||(20527485-20527518)
chr7 (369-402)||(21285409-21285442)
chr7 (302-343)||(44843756-44843797)
[»] chr1 (4 HSPs)
chr1 (369-402)||(9527432-9527465)
chr1 (369-402)||(47939254-47939287)
chr1 (369-401)||(17954915-17954947)
chr1 (312-396)||(36824311-36824395)
[»] chr8 (1 HSPs)
chr8 (369-421)||(10292340-10292391)


Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 439
Target Start/End: Complemental strand, 7623262 - 7622843
Alignment:
Q  19 ctgttcatattaaattatcagtgataatttagttcgaaggattaaaattcgtaacctgaaaaaaccccacactttgatattatttttcttgccttaatta 118  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7623262 ctgttcatattaaattatcagtgataatt-agttcgaaggattaaaattcgtaacctgaaaaaaccccacactttgatattatttttcttgccttaatta 7623164  T
Q  119 gaatttgttaacatgaaggtcaaccactttatttgacccataggtataattgccggtaaaccataaactaagttagctagatacttcctcctcgaagggt 218  Q
    | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7623163 ggatttgttaacatgaaggtcaaccactttatttgatccataggtataattgccggtaaaccataaactaagttagctagatacttcctcctcgaagggt 7623064  T
Q  219 tggggacaagatatatattgaagaatgtgtacatgattttaaaaaataattttagagtattaannnnnnnnggtcgagtaacatagtagttagaattcac 318  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  7623063 tggggacaagatatatattgaagaatgtatacatgattttaaaaaataattttagagtattaattttttttagtcgagtaacatagtagttagaattcac 7622964  T
Q  319 attataagatgaataaatgaggtgtgtgaagatcaaacttcaacatttgaatataacaatgcattgtccatgccaactgagctaacgctcacggagactt 418  Q
    ||||| || ||||||||| |||||| ||| | |||||| ||||||| ||||||||||||| |||||||| ||  ||||||||||||||||||||| ||||    
T  7622963 attatgaggtgaataaataaggtgtctgaggttcaaacctcaacatctgaatataacaattcattgtccctgttaactgagctaacgctcacggaaactt 7622864  T
Q  419 tttataatattgctagtataa 439  Q
    |||||| ||||||||||||||    
T  7622863 tttatagtattgctagtataa 7622843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 7660366 - 7660486
Alignment:
Q  40 tgataatttagttcgaaggatt-----aaaattcgtaacctgaaaaaaccccacactttgat-attatttttcttgccttaattagaatttgttaacatg 133  Q
    ||||||||||||||||||||||     || |||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||  ||||||||    
T  7660366 tgataatttagttcgaaggatttgaaaaatattcgtaacctgaaaaaatcccacactttgataattttttttcttgccttaattagaattcattaacatg 7660465  T
Q  134 aaggtcaaccactttatttga 154  Q
     ||||||||||||||||||||    
T  7660466 taggtcaaccactttatttga 7660486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 422
Target Start/End: Original strand, 40557620 - 40557671
Alignment:
Q  370 tataacaatgcattgtccatgccaactgagctaacgctcacggagacttttta 422  Q
    |||||||||||||||||| ||||||||||| | | ||||||||||||||||||    
T  40557620 tataacaatgcattgtccttgccaactgag-ttatgctcacggagacttttta 40557671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 343
Target Start/End: Original strand, 14271923 - 14271957
Alignment:
Q  309 tagaattcacattataagatgaataaatgaggtgt 343  Q
    |||||||||| ||||||||||||||||||||||||    
T  14271923 tagaattcaccttataagatgaataaatgaggtgt 14271957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 343
Target Start/End: Original strand, 44953157 - 44953191
Alignment:
Q  309 tagaattcacattataagatgaataaatgaggtgt 343  Q
    |||||||||||||||||| ||||||||||||||||    
T  44953157 tagaattcacattataaggtgaataaatgaggtgt 44953191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 43774224 - 43774191
Alignment:
Q  369 atataacaatgcattgtccatgccaactgagcta 402  Q
    ||||||||||||||||||| ||||||||||||||    
T  43774224 atataacaatgcattgtccctgccaactgagcta 43774191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 55195855 - 55195891
Alignment:
Q  307 gttagaattcacattataagatgaataaatgaggtgt 343  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  55195855 gttataattcaccttataagatgaataaatgaggtgt 55195891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 402
Target Start/End: Complemental strand, 9963522 - 9963422
Alignment:
Q  302 tagtagttagaattcacattataagatgaataaatgaggtgtgtgaagatcaaacttcaacatttgaatataacaatgcattgtccatgccaactgagct 401  Q
    |||| |||||||||||| ||||||| ||||||| || || ||  |||| || |||  ||||   || ||||||||||||||||||| |||||||||||||    
T  9963522 tagtggttagaattcactttataaggtgaataagtggggggtccgaagttcgaaccccaacccctgcatataacaatgcattgtccctgccaactgagct 9963423  T
Q  402 a 402  Q
    |    
T  9963422 a 9963422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 3102183 - 3102216
Alignment:
Q  369 atataacaatgcattgtccatgccaactgagcta 402  Q
    ||||||||||||||||||| ||||||||||||||    
T  3102183 atataacaatgcattgtccctgccaactgagcta 3102216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 343
Target Start/End: Complemental strand, 13754108 - 13754071
Alignment:
Q  306 agttagaattcacattataagatgaataaatgaggtgt 343  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  13754108 agttagaattcaccttataagatgaataaatggggtgt 13754071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 26409285 - 26409246
Alignment:
Q  377 atgcattgtccatgccaactgagctaacgctcacggagact 417  Q
    ||||||||||||| ||||||||||||| |||||||||||||    
T  26409285 atgcattgtccataccaactgagctaa-gctcacggagact 26409246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 343
Target Start/End: Original strand, 22478723 - 22478770
Alignment:
Q  296 gtaacatagtagttagaattcacattataagatgaataaatgaggtgt 343  Q
    ||||| ||||||||||||||||| ||||||| |||||||||| |||||    
T  22478723 gtaacctagtagttagaattcaccttataaggtgaataaatggggtgt 22478770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 9084798 - 9084765
Alignment:
Q  369 atataacaatgcattgtccatgccaactgagcta 402  Q
    ||||||||||||||||||| ||||||||||||||    
T  9084798 atataacaatgcattgtccctgccaactgagcta 9084765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 31480310 - 31480277
Alignment:
Q  369 atataacaatgcattgtccatgccaactgagcta 402  Q
    ||||||||||||||||||| ||||||||||||||    
T  31480310 atataacaatgcattgtccctgccaactgagcta 31480277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 36008314 - 36008281
Alignment:
Q  369 atataacaatgcattgtccatgccaactgagcta 402  Q
    ||||||||||||||||||| ||||||||||||||    
T  36008314 atataacaatgcattgtccctgccaactgagcta 36008281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 48512238 - 48512205
Alignment:
Q  369 atataacaatgcattgtccatgccaactgagcta 402  Q
    ||||||||||||||||||| ||||||||||||||    
T  48512238 atataacaatgcattgtccctgccaactgagcta 48512205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 56531292 - 56531325
Alignment:
Q  369 atataacaatgcattgtccatgccaactgagcta 402  Q
    ||||||||||||||||||| ||||||||||||||    
T  56531292 atataacaatgcattgtccttgccaactgagcta 56531325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 419
Target Start/End: Complemental strand, 28970207 - 28970158
Alignment:
Q  369 atataacaatgcattgtccatgccaactgagctaacgctcacggagacttt 419  Q
    |||||||||| |||||||| ||||||||||||| |||||||||| ||||||    
T  28970207 atataacaatacattgtccctgccaactgagct-acgctcacggggacttt 28970158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 2945635 - 2945602
Alignment:
Q  369 atataacaatgcattgtccatgccaactgagcta 402  Q
    ||||||||||||||||||| ||||||||||||||    
T  2945635 atataacaatgcattgtccctgccaactgagcta 2945602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 398
Target Start/End: Complemental strand, 4078701 - 4078672
Alignment:
Q  369 atataacaatgcattgtccatgccaactga 398  Q
    ||||||||||||||||||||||||||||||    
T  4078701 atataacaatgcattgtccatgccaactga 4078672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2098 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold2098
Description:

Target: scaffold2098; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 669 - 702
Alignment:
Q  369 atataacaatgcattgtccatgccaactgagcta 402  Q
    ||||||||||||||||||| ||||||||||||||    
T  669 atataacaatgcattgtccctgccaactgagcta 702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 20527485 - 20527518
Alignment:
Q  369 atataacaatgcattgtccatgccaactgagcta 402  Q
    ||||||||||||||||||| ||||||||||||||    
T  20527485 atataacaatgcattgtccctgccaactgagcta 20527518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 21285409 - 21285442
Alignment:
Q  369 atataacaatgcattgtccatgccaactgagcta 402  Q
    ||||||||||||||||||| ||||||||||||||    
T  21285409 atataacaatgcattgtccctgccaactgagcta 21285442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 44843797 - 44843756
Alignment:
Q  302 tagtagttagaattcacattataagatgaataaatgaggtgt 343  Q
    |||| |||||||||||| |||||||||||||||||| |||||    
T  44843797 tagtggttagaattcaccttataagatgaataaatggggtgt 44843756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 9527465 - 9527432
Alignment:
Q  369 atataacaatgcattgtccatgccaactgagcta 402  Q
    ||||||||||||||||||| ||||||||||||||    
T  9527465 atataacaatgcattgtccctgccaactgagcta 9527432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 47939254 - 47939287
Alignment:
Q  369 atataacaatgcattgtccatgccaactgagcta 402  Q
    ||||||||||||||||||| ||||||||||||||    
T  47939254 atataacaatgcattgtccctgccaactgagcta 47939287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 401
Target Start/End: Original strand, 17954915 - 17954947
Alignment:
Q  369 atataacaatgcattgtccatgccaactgagct 401  Q
    ||||||||||||||||||| |||||||||||||    
T  17954915 atataacaatgcattgtccctgccaactgagct 17954947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 396
Target Start/End: Complemental strand, 36824395 - 36824311
Alignment:
Q  312 aattcacattataagatgaataaatgaggtgtgtgaagatcaaacttcaacatttgaatataacaatgcattgtccatgccaact 396  Q
    ||||||| || ||||||||||||||||||||| ||| | || ||||||||| | |  ||||||||||  ||| ||| ||||||||    
T  36824395 aattcactttttaagatgaataaatgaggtgtctgaggttcgaacttcaacttctacatataacaatatattatccctgccaact 36824311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 421
Target Start/End: Complemental strand, 10292391 - 10292340
Alignment:
Q  369 atataacaatgcattgtccatgccaactgagctaacgctcacggagacttttt 421  Q
    |||||| |||||||||||| ||||||||||||| | |||||||| ||||||||    
T  10292391 atataataatgcattgtccctgccaactgagct-atgctcacggggacttttt 10292340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University