View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9138_low_12 (Length: 445)
Name: NF9138_low_12
Description: NF9138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9138_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 83 - 430
Target Start/End: Complemental strand, 30805191 - 30804844
Alignment:
| Q |
83 |
tcatggtactacatgcaatttgaagtacacacccacttgaaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattggaaaactgca |
182 |
Q |
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| T |
30805191 |
tcatggtactacatgcaatttgaagtacacacccacttgaaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattggaaaactgca |
30805092 |
T |
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| Q |
183 |
tnnnnnnntacgtggcatagttattagctaaaagtttgattctgcatgacacgcgcaaggcatgccctagatagattttgtgctgttttctgcaacaaaa |
282 |
Q |
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| T |
30805091 |
taaaaaaatacgtggcatagttattagctaaaagtttgattctgcatgacacgcgcaaggcatgccctagatagattttgtgctgttttctgcaacaaaa |
30804992 |
T |
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| Q |
283 |
atattgatattcattagtaaccgttctatgaatcaactcaaacttcagcatatggcaacttcaccactatgcaccaaattcattcatcacttttacttca |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30804991 |
atattgatattcattagtaaccgttctatgaatcaactcaaacttcagcatatggcaacttcaccactatgcaccaaattcattcatcacttttacttcc |
30804892 |
T |
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| Q |
383 |
cagacacgtgcttgcttcctgaataaagtaagcatatactcaaaaaat |
430 |
Q |
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| T |
30804891 |
cagacacgtgcttgcttcctgaataaagtaagcatatactcaaaaaat |
30804844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 83 - 426
Target Start/End: Complemental strand, 30816961 - 30816618
Alignment:
| Q |
83 |
tcatggtactacatgcaatttgaagtacacacccacttgaaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattggaaaactgca |
182 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30816961 |
tcatggtactgcatgcaatttgaagtacacacgcacttgaaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattgaaaaactgca |
30816862 |
T |
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| Q |
183 |
tnnnnnnntacgtggcatagttattagctaaaagtttgattctgcatgacacgcgcaaggcatgccctagatagattttgtgctgttttctgcaacaaaa |
282 |
Q |
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| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30816861 |
taaaaaaatacgtggcatagttattagctaagagtttgattctgcatgacacgcgcaaggcatgccctagatagattttgtgctgttttctgcaacaaaa |
30816762 |
T |
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| Q |
283 |
atattgatattcattagtaaccgttctatgaatcaactcaaacttcagcatatggcaacttcaccactatgcaccaaattcattcatcacttttacttca |
382 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30816761 |
atattgagtttcagtagtaaccgttctatgaatcaactcaaacttcagcatatggcaacttcaccactatgcaccaaattcattcatcacttttacttca |
30816662 |
T |
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| Q |
383 |
cagacacgtgcttgcttcctgaataaagtaagcatatactcaaa |
426 |
Q |
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| T |
30816661 |
cagacacgtgcttgcttcctgaataaaatatacatatactcaaa |
30816618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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