View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9138_low_15 (Length: 357)
Name: NF9138_low_15
Description: NF9138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9138_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 12596109 - 12596450
Alignment:
| Q |
1 |
acaagagatgtgcgtctacttgatatccttggagttgactttatatatgaagtggagggattgaaagcgcatgagtcccttaagctcttcagttggcatg |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |
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| T |
12596109 |
acaagagatgtgcgtctacttgacatccttggagttgactttatatatgaagtggagggtttgaatgcgcatgagtcccttaagctcttcagttttcatg |
12596208 |
T |
|
| Q |
101 |
cttttagggaggcaaggccaacaaaagacttcgctattctctcaaaagatgtagttgcctactgtggtggactaccactggctcttgaagtccttgggtc |
200 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| | |||||||||||| |||||||||||||||||||| |
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| T |
12596209 |
cttttagggaggcaaggtcaacaaaagacttcgcaattctctcaagagatgtagttgcctactgcgatggactaccactagctcttgaagtccttgggtc |
12596308 |
T |
|
| Q |
201 |
ttacttgttcaagaggagaaaacaagagtggcagagtgtattgttaaagctnnnnnnnntacccaataatcaaatacatgagatactaaaaataagtttc |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| | |||||| ||| |||| || ||||||| ||| |||||||||||||||| |
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| T |
12596309 |
ttacttgttcaagaggagaaaacaagagtggcagagtgtattatcaaagctaaaaaagatactcaatgatgaaatacacaagaaactaaaaataagtttc |
12596408 |
T |
|
| Q |
301 |
gatggtttaagggatcgtatggaaaaggatatatttcttgat |
342 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12596409 |
gaaggtttaagggatcgtatggaaaaggatatatttcttgat |
12596450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 15801361 - 15801705
Alignment:
| Q |
1 |
acaagagatgtgcgtctacttgatatccttggagttgactttatatatgaagtggagggattgaaagcgcatgagtcccttaagctcttcagttggcatg |
100 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| ||||| ||||||| |||||||||||| | ||| || || | || ||| |||| ||||||| |
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|
| T |
15801361 |
acaagagatgcacgtctacttgacatccttggagttgattttatttatgaagcggagggattgaatgtgcacgaatctcgtaggcttttcaactggcatg |
15801460 |
T |
|
| Q |
101 |
cttttagggaggcaaggccaacaaaagacttcgctattctctcaaaagatgtagttgcctactgtggtggactaccactggctcttgaagtccttgggtc |
200 |
Q |
| |
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| |||| |||||| | |||| ||| ||| || ||||| |||||||||| |||| ||||||||||||||||| ||||||||||||||||| || |
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|
| T |
15801461 |
cgtttaaggaggcgaatccaagtgaagctttcctcatactctccggagatgtagtttcctattgtggtggactaccactagctcttgaagtccttggatc |
15801560 |
T |
|
| Q |
201 |
ttacttgttcaagaggagaaaacaagagtggcagagtgtattgttaaagctnnnnnnnntacccaataatcaaatacatgagatactaaaaataagtttc |
300 |
Q |
| |
|
|||||| ||||| |||||||||| |||||||||||||||| | | ||||| |||||||| |||||||||| |||| |||||||||||| || |
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|
| T |
15801561 |
ttacttattcaataggagaaaacgagagtggcagagtgtaatatccaagctacaaaagatacccaatgatcaaatacacgagaaactaaaaataagcttt |
15801660 |
T |
|
| Q |
301 |
gatggtttaagggatcgtatggaaaaggatatatttcttgatgtc |
345 |
Q |
| |
|
||||||||| ||||| |||||||||| ||||||||||||||||| |
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|
| T |
15801661 |
gatggtttagaggatcatatggaaaagaatatatttcttgatgtc |
15801705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 3313227 - 3313570
Alignment:
| Q |
1 |
acaagagatgtgcgtctacttgatatccttggagttgactttatatatgaagtggagggattgaaagcgcatgagtcccttaagctcttcagttggcatg |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||| |||| |||||| ||||| |
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|
| T |
3313227 |
acaagagatgtacgtctacttgatatccttggagttgactttatatatgaagcggagggattgaattcggttgagtcccttgagcttttcagtcagcatg |
3313326 |
T |
|
| Q |
101 |
cttttagggaggcaaggccaacaaaagacttcgctattctctcaaaagatgtagttgcctactgtggtggactaccactggctcttgaagtccttgggtc |
200 |
Q |
| |
|
| ||||||||| |||| |||| | ||| ||| |||||| |||| | ||||||||||||| ||||||||||| ||||| ||||||||||||||||| || |
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|
| T |
3313327 |
cgtttagggagacaagtccaatagaaggtttccttattctttcaagatatgtagttgcctattgtggtggactgccactagctcttgaagtccttggatc |
3313426 |
T |
|
| Q |
201 |
ttacttgttcaagaggagaaaacaagagtggcagagtgtattgttaaagctnnnnnnnntacccaataatcaaatacatgagatactaaaaataagtttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||| |||| ||| ||||||||||||||| |||||||||||| || |
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|
| T |
3313427 |
ttacttgttcaagaggagaaaacaagagtggcagagtgtattatcaaagctagaaaagatacctaatgatcaaatacatgagaaactaaaaataagcttt |
3313526 |
T |
|
| Q |
301 |
gatggtttaagggatcgtatggaaaaggatatatttcttgatgt |
344 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3313527 |
gacggtttaagggatcatatggaaaaggatatatttcttgatgt |
3313570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 4 - 345
Target Start/End: Original strand, 3362600 - 3362941
Alignment:
| Q |
4 |
agagatgtgcgtctacttgatatccttggagttgactttatatatgaagtggagggattgaaagcgcatgagtcccttaagctcttcagttggcatgctt |
103 |
Q |
| |
|
|||||| ||||| ||||| ||||||||| |||||| ||||| ||||||| |||| |||||| || |||||||||| |||| ||| || ||||||| |
|
|
| T |
3362600 |
agagatctgcgtgtacttaatatccttgaagttgattttatctatgaagcagaggaattgaatgctagtgagtcccttgagcttttctgtaaacatgctt |
3362699 |
T |
|
| Q |
104 |
ttagggaggcaaggccaacaaaagacttcgctattctctcaaaagatgtagttgcctactgtggtggactaccactggctcttgaagtccttgggtctta |
203 |
Q |
| |
|
|| || |||| | |||||| |||||||| ||||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||| |
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|
| T |
3362700 |
ttcggaaggcgattccaacacaagacttccttattctctcaagagatgtagttgcctattgtggtggaataccactagctcttgaagtccttggatctta |
3362799 |
T |
|
| Q |
204 |
cttgttcaagaggagaaaacaagagtggcagagtgtattgttaaagctnnnnnnnntacccaataatcaaatacatgagatactaaaaataagtttcgat |
303 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||| | |||||| |||||||| |||||||||| ||||||||||||||||| || ||| |
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|
| T |
3362800 |
cttgttcaagaggaaaaaacaagagtggcggagtgtattatcaaagctagaaaagatacccaatgatcaaatacacgagatactaaaaataagctttgat |
3362899 |
T |
|
| Q |
304 |
ggtttaagggatcgtatggaaaaggatatatttcttgatgtc |
345 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
3362900 |
ggtttaaaggatcgtatggaaaagaatatatttcttgatgtc |
3362941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 4 - 345
Target Start/End: Complemental strand, 3393283 - 3392942
Alignment:
| Q |
4 |
agagatgtgcgtctacttgatatccttggagttgactttatatatgaagtggagggattgaaagcgcatgagtcccttaagctcttcagttggcatgctt |
103 |
Q |
| |
|
|||||| ||||| ||||| ||||||||| |||||| ||||| ||||||| ||||||||||| || ||||||||| |||| ||| || | ||||||| |
|
|
| T |
3393283 |
agagatctgcgtgtacttaatatccttgaagttgattttatctatgaagcagagggattgaatgctagcgagtcccttgagcttttctgtggacatgctt |
3393184 |
T |
|
| Q |
104 |
ttagggaggcaaggccaacaaaagacttcgctattctctcaaaagatgtagttgcctactgtggtggactaccactggctcttgaagtccttgggtctta |
203 |
Q |
| |
|
||||| ||| || |||||| |||||||| ||||||||||| | ||||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||| |
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|
| T |
3393183 |
ttaggaaggtaattccaacagaagacttccttattctctcaagatatgtagttgcctattgtggtggaataccactagctcttgaagtccttggatctta |
3393084 |
T |
|
| Q |
204 |
cttgttcaagaggagaaaacaagagtggcagagtgtattgttaaagctnnnnnnnntacccaataatcaaatacatgagatactaaaaataagtttcgat |
303 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||||||| ||||||||| || || || |
|
|
| T |
3393083 |
cttattgaagaggagaaaacaagagtggcagagtgtattatcaaagcttgaaaaaatacccaatgatcaaatacatgagaaactaaaaattagctttaat |
3392984 |
T |
|
| Q |
304 |
ggtttaagggatcgtatggaaaaggatatatttcttgatgtc |
345 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3392983 |
ggtttaagcgatcgtatggaaaaggatatatttcttgatgtc |
3392942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 3263938 - 3263888
Alignment:
| Q |
291 |
aataagtttcgatggtttaagggatcgtatggaaaaggatatatttcttga |
341 |
Q |
| |
|
|||||||| ||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
3263938 |
aataagttacgatggtttaaaggatggtatggaaaaggatatatttcttga |
3263888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 7166217 - 7166128
Alignment:
| Q |
151 |
gtagttgcctactgtggtggactaccactggctcttgaagtccttgggtcttacttgttcaagaggagaaaacaagagtggcagagtgta |
240 |
Q |
| |
|
||||||||||| ||||| ||| |||||||||||||||||||| | || |||||||| | | ||||| ||||||||| ||| | |||||| |
|
|
| T |
7166217 |
gtagttgcctattgtggaggattaccactggctcttgaagtcatcggttcttacttatacgggaggacaaaacaagaatgggaaagtgta |
7166128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 3408848 - 3408794
Alignment:
| Q |
173 |
taccactggctcttgaagtccttgggtcttacttgttcaagaggagaaaacaaga |
227 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| || |||||| ||||||||| |
|
|
| T |
3408848 |
taccactggctcttgaagtccttggatcctacttatttgagaggacaaaacaaga |
3408794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 32412593 - 32412458
Alignment:
| Q |
71 |
atgagtcccttaagctcttcagttggcatgcttttagggaggcaaggccaacaaaagacttcgctattctctcaaaagatgtagttgcctactgtggtgg |
170 |
Q |
| |
|
||||||||||| | || |||||||||||||||||||| || |||| ||||||||| |||| || ||||| | | |||| ||||| |||||||| || |
|
|
| T |
32412593 |
atgagtcccttgaacttttcagttggcatgcttttagagaaccaagtccaacaaaatactttactgaactctctagaaatgttgttgcttactgtggagg |
32412494 |
T |
|
| Q |
171 |
actaccactggctcttgaagtccttgggtcttactt |
206 |
Q |
| |
|
| | ||||| ||||||||| ||||||| |||||||| |
|
|
| T |
32412493 |
attgccacttgctcttgaaatccttggatcttactt |
32412458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 6907480 - 6907345
Alignment:
| Q |
71 |
atgagtcccttaagctcttcagttggcatgcttttagggaggcaaggccaacaaaagacttcgctattctctcaaaagatgtagttgcctactgtggtgg |
170 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| | |||| |||| | | ||||| | |||||||||| |||||||| |||||||| || |
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|
| T |
6907480 |
atgagtcccttgagcttttcagttggcatgcttttagaaacgcaactccaagagcaaacttcagtgatctctcaaaaaatgtagttaattactgtggagg |
6907381 |
T |
|
| Q |
171 |
actaccactggctcttgaagtccttgggtcttactt |
206 |
Q |
| |
|
| |||| ||||| |||||||||| || |||||||| |
|
|
| T |
6907380 |
attacccttggctgttgaagtcctcggatcttactt |
6907345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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