View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9138_low_19 (Length: 307)
Name: NF9138_low_19
Description: NF9138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9138_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 23 - 293
Target Start/End: Complemental strand, 25514829 - 25514555
Alignment:
| Q |
23 |
ctcaatataatctcatcttcttactacaagtcttctctctacatactcaaaccacttaaaatgtacaaagaattaagttctcaaaatgcactctttaaga |
122 |
Q |
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| T |
25514829 |
ctcaatataatatctttttcttactacaaattttctctctacatgctcaaaccacttaaaatgcacaaagaattaagttcttaaaatgcactctttaaga |
25514730 |
T |
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| Q |
123 |
tgcatcaaccaagttctctaaatgcactctccaggttgcatcaacca--ctcatagaataagcaccttagatttttaacacactcatcactttgttgtgt |
220 |
Q |
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| T |
25514729 |
tgcatcaaccaaattctcaaaatgcactctctaggttgcatcaaccactctcatagaataagcaccttagatttttaacacactcatcactttgttgtgt |
25514630 |
T |
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| Q |
221 |
gttaaaatctagaagaa---nnnnnnnncaaacctaatacaaaaataaattcgatgtcgacccctacgagtattat |
293 |
Q |
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| T |
25514629 |
gttaaaatctagaagaatttttttttttcaaccctaatac-aaaataaattcgatgtcgacccctacgagtattat |
25514555 |
T |
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Back To:
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 2518599 - 2518635
Alignment:
| Q |
46 |
ctacaagtcttctctctacatactcaaaccacttaaa |
82 |
Q |
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| T |
2518599 |
ctacaagtcttctctctacataatcaaaccacctaaa |
2518635 |
T |
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