View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9138_low_2 (Length: 618)
Name: NF9138_low_2
Description: NF9138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9138_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 11 - 588
Target Start/End: Complemental strand, 31662844 - 31662269
Alignment:
| Q |
11 |
gtttggtgtttcaggaggttgtgtctctgggtgctgcactaggcgtttgagcactatgcactaggcgtaggtctgtgtctagttctataatataggctat |
110 |
Q |
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| T |
31662844 |
gtttggtgtttcaggaggttgtgtctctgggtgctgcactaggcgtttgagcactatgcactaggcgtaggtctgtgtctagttctataatataggctat |
31662745 |
T |
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| Q |
111 |
ttcaacacaattttgaggaagaagagtgagacatactagggtttatcaaaaggaagaattttaggcgatcaaaggctaagaatttagtatttttggacta |
210 |
Q |
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| T |
31662744 |
ttcaacacaattttgaggaagaagagtgagacaaactagggtttatcaaaaggaagaattttaagcgatcaaaggctaagaatttagtatttttggaata |
31662645 |
T |
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| Q |
211 |
ttctct--agtttcccaacccaaattttcgannnnnnnnnnnnnnngaatttagagtttattgttgaaggtttatttcttgtagacattgtatctcttct |
308 |
Q |
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| T |
31662644 |
ttctctctaggttcccaacccaaattctcgattttttttttt----gaaattagagtttattgttgaaggtttatttcttgtagacattgtatctcttct |
31662549 |
T |
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| Q |
309 |
aaacaaaaccatgtgactcaccaagtataaaagacatcctattccagaattatcacaatgccaaagatcaatagaacattgaaagacttcaatagagaaa |
408 |
Q |
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| T |
31662548 |
aaacaaaaccatgtgactcaccaagtataaaagacatcctattccagaattatcacaatgccaaagatcaatagaacattcaaagacttcaatagagaaa |
31662449 |
T |
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| Q |
409 |
atagcccctgacatagcaccaaccgcagcacctcgaatgaagccactctctgttttttggcctatcaaagctccagtcatagcccccaacaaagttccca |
508 |
Q |
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| T |
31662448 |
atagcccctgacatagcaccaaccgcagcacctcgaatgaagccactctctgttttttggcctatcaaagctccagtcatagcccccaacaaagttccca |
31662349 |
T |
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| Q |
509 |
ctgccaacaaaacaagccaagtcatcgaaccttaataatcccgaatatgtcgcaaaaactgaatgattttgaaacaagac |
588 |
Q |
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| T |
31662348 |
ctgccaacaaaacaagccaagtcatcgaaccttaataatcccgaatatgtcgcaaaaactgaatgattttgaaacaagac |
31662269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 324 - 512
Target Start/End: Original strand, 9084681 - 9084869
Alignment:
| Q |
324 |
actcaccaagtataaaagacatcctattccagaattatcacaatgccaaagatcaatagaacattgaaagacttcaatagagaaaatagcccctgacata |
423 |
Q |
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| T |
9084681 |
actcaccaagtataaaagacaaccaattccagattcatcagaatgccaaagaacaagagatgattcaaaaacttcaatagaaaaaacagctcctgatata |
9084780 |
T |
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| Q |
424 |
gcaccaaccgcagcacctcgaatgaagccactctctgttttttggcctatcaaagctccagtcatagcccccaacaaagttcccactgc |
512 |
Q |
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| T |
9084781 |
gcaccaacagcggcacctcgaatgaaaccgctttcggtctcttgacctatcaaagctcctgtcaaagcacccaataatgttccaactgc |
9084869 |
T |
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