View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9138_low_20 (Length: 299)
Name: NF9138_low_20
Description: NF9138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9138_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 7 - 274
Target Start/End: Original strand, 55824093 - 55824361
Alignment:
| Q |
7 |
ttggtgttgggcttagcacatttgacaaagcatcagtaagtttaatcatttcaaaaacaaaaagggatgttgctttttgttggagcactatctatt-act |
105 |
Q |
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| T |
55824093 |
ttggtgttgggcttagcacatttgacaaagcatcagtaagtttaatcatttcaaaaacaaaaagggatgttgctttttgttggagcactatctatttact |
55824192 |
T |
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| Q |
106 |
caatcttctgtgctttatttcctatttgtatgattgcaggtccattattatgtgcagtctcacattcaaatgaatgaatatcgcgattgtgtaatattgg |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
55824193 |
caatcttctgtgctttatttcctatttgtatgattgcaggtccattattatgtgcagtctcacattcaaatgaatgaatatcgcgatcgtgtcatattgg |
55824292 |
T |
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| Q |
206 |
ttagtattagtatttagagtcttcatatttaacctattatttgacctttttgttctcttcttctgaccc |
274 |
Q |
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| T |
55824293 |
ttagtattagtatttagagtcttcatatttaacctattatttgacctttttgttctcttcttctgaccc |
55824361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 56153357 - 56153083
Alignment:
| Q |
7 |
ttggtgttgggcttagcacatttgacaaagcatcagtaagtttaatcatttcaaaaacaaaaagggatgttgctttttgttggagcactatctattactc |
106 |
Q |
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| T |
56153357 |
ttggtgttgggcttagcacatttgacaaagcatcggtaagtttaatcatttcaaaaacaaaaagggatgttgctttttgttggagcactatctattactc |
56153258 |
T |
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| Q |
107 |
aatcttctgtgctttatttcctatttgtatgattgcaggtccattattatgtgcagtctcacattcaaatgaatgaatatcgcgattgtgtaatattggt |
206 |
Q |
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| T |
56153257 |
aatcttctgtgctt-atttcctatttgtatgattgcaggtccattattatgtgcagtctcacattcaaatgaatgaatatcgcgatcgtgtaatcttggt |
56153159 |
T |
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| Q |
207 |
tagtattagtatttagagtcttcatatttaacctattatttgacctttttgttctcttcttctgacccgcgatatg |
282 |
Q |
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| T |
56153158 |
gagtattattatttagagtcttcatatttaacctattatttgacctttttgttctcttcttctgacccgtgatatg |
56153083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 9888488 - 9888421
Alignment:
| Q |
139 |
ttgcaggtccattattatgtgcagtctcacattcaaatgaatgaatatcgcgattgtgtaatattggt |
206 |
Q |
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| T |
9888488 |
ttgcaggtccattattatgttcagtctcacattcaaattaatgaatatcgtgatcgtgtaatcttggt |
9888421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 9888647 - 9888607
Alignment:
| Q |
9 |
ggtgttgggcttagcacatttgacaaagcatcagtaagttt |
49 |
Q |
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| T |
9888647 |
ggtgttgggcttagcacattcgacaaagcatctgtaagttt |
9888607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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