View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9138_low_22 (Length: 268)
Name: NF9138_low_22
Description: NF9138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9138_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 9e-79; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 3313250 - 3313014
Alignment:
| Q |
17 |
atcaagtagacgcacatctcttgttgtgatgattattatacttccatgaccaatcccatttcggtttccgcatagtgcatttaattgctcagaggaactc |
116 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| || ||| ||||| ||| | |||| |
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| T |
3313250 |
atcaagtagacgtacatctcttgttgtgatgattattatacttcctggaccaatcccatttcgatttccgcataatgaattgaattgatcaaactcactc |
3313151 |
T |
|
| Q |
117 |
acatcatcaagttcaacaagtgcctgttttgtgcaaagtcgttccttgatcatagcttttccccactcgatactatgcacctttatctttcttgttttga |
216 |
Q |
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|||||||||||| ||||||||||| |||||||| |||||||||||| |||||||||||||| |||| | |||||||||||||||||| |||||||||| |
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| T |
3313150 |
acatcatcaagtacaacaagtgcccgttttgtgacaagtcgttccttaatcatagcttttccaaactcaacactatgcacctttatcttccttgttttga |
3313051 |
T |
|
| Q |
217 |
ggatatctgaaagaagttgttcttgtaaatcgattct |
253 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
3313050 |
ggatatctgaaagaagttgttcttgtaaatcgattct |
3313014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 3393266 - 3393497
Alignment:
| Q |
20 |
aagtagacgcacatctcttgttgtgatgattattatacttccatgaccaatcccatttcggtttccgcatagtgcatttaattgctcagaggaactcaca |
119 |
Q |
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||||| ||||| |||||| |||||||||||||||| |||||| |||||| | ||||| | | ||||||||||| ||||||||| ||| ||| |
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| T |
3393266 |
aagtacacgcagatctctggttgtgatgattattacacttcccggaccaacactatttcctt---cacatagtgcattaaattgctcaagctcactaaca |
3393362 |
T |
|
| Q |
120 |
tcatcaagttcaacaagtgcctgttttgtgcaaagtcgttccttgatcatagcttttccccactcgatactatgcacctttatctttcttgttttgagga |
219 |
Q |
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| T |
3393363 |
tcatcaagtacagcaagtatgcgttttgaacgaagtcgttgcttgatcatagcttttccttgctcaacactaagcacctttatctttcttgttttcagga |
3393462 |
T |
|
| Q |
220 |
tatctgaaagaagttgttcttgtaaatcgattctg |
254 |
Q |
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| T |
3393463 |
tatctgaaagaagttgttcttgtaaatcgattctg |
3393497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 3362617 - 3362386
Alignment:
| Q |
20 |
aagtagacgcacatctcttgttgtgatgattattatacttccatgaccaatcccatttcggtttccgcatagtgcatttaattgctcagaggaactcaca |
119 |
Q |
| |
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||||| ||||| |||||| ||||||||||||||||||||||| |||||| | |||||| | ||| ||||||| ||||| ||| ||| ||| |
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| T |
3362617 |
aagtacacgcagatctctggttgtgatgattattatacttcctggaccaacactatttcgttg---gcagagtgcatcaaattgttcaagctcactaaca |
3362521 |
T |
|
| Q |
120 |
tcatcaagttcaacaagtgcctgttttgtgcaaagtcgttccttgatcatagcttttccccactcgatactatgcacctttatctttcttgttttgagga |
219 |
Q |
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|
||||||||| || ||||| |||||| || |||| ||| ||||||||||| |||||| ||| | |||| ||||||||||||||||||||||||||| |
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| T |
3362520 |
tcatcaagtacagcaagtatgcgttttgcgcgaagttgttgcttgatcatagtttttccttgctcaacactaagcacctttatctttcttgttttgagga |
3362421 |
T |
|
| Q |
220 |
tatctgaaagaagttgttcttgtaaatcgattctg |
254 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |
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| T |
3362420 |
tatctgaaagaaattgttcttgtaaatcgattctg |
3362386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 15801383 - 15801154
Alignment:
| Q |
18 |
tcaagtagacgcacatctcttgttgtgatgattattatacttccatgaccaatcccatttcggtttccgcatagtgcatttaattgctcagaggaactca |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| |||| ||||||||||||||| | ||| | |
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| T |
15801383 |
tcaagtagacgtgcatctcttgttgtgatgattattatgcttcctggaccaatcccatttcgatttccacataatgcatttaattgctcgcgtgtactga |
15801284 |
T |
|
| Q |
118 |
catcatcaagttcaacaagtgcctgttttgtgcaaagtcgttccttgatcatagcttttccccactcgatactatgcacctttatctttcttgttttgag |
217 |
Q |
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||||||||||| |||||||||| |||| |||||||||||||| ||||||||||||||||||||||| | | |||||||||||| ||||||||||| || |
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| T |
15801283 |
catcatcaagtataacaagtgcccgtttcgtgcaaagtcgttcattgatcatagcttttccccactcaacattatgcacctttacatttcttgttttaag |
15801184 |
T |
|
| Q |
218 |
gatatctgaaagaagttgttcttgtaaatc |
247 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
15801183 |
gatatctgaaagaagttgttcttgtaaatc |
15801154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 18924283 - 18924249
Alignment:
| Q |
35 |
tcttgttgtgatgattattatacttccatgaccaa |
69 |
Q |
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||||||||||||||||||||||||||| ||||||| |
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| T |
18924283 |
tcttgttgtgatgattattatacttccttgaccaa |
18924249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 34715660 - 34715697
Alignment:
| Q |
32 |
atctcttgttgtgatgattattatacttccatgaccaa |
69 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||||| |
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| T |
34715660 |
atctctcgttgtgatgattattatacttccttgaccaa |
34715697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 34721218 - 34721259
Alignment:
| Q |
30 |
acatctcttgttgtgatgattattatacttccatgaccaatc |
71 |
Q |
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||||||||||||||||||||||||| |||||| |||| |||| |
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| T |
34721218 |
acatctcttgttgtgatgattattacacttccttgacaaatc |
34721259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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