View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9138_low_5 (Length: 514)
Name: NF9138_low_5
Description: NF9138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9138_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Complemental strand, 4752650 - 4752168
Alignment:
| Q |
18 |
tttttcatacgcgttttcatatacatagctttaaatgtgatataaacattacgaattttgatatttcagatcaatattcaattttgtaaagtaaaatctg |
117 |
Q |
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| T |
4752650 |
tttttcatacgcgttttcatatacatagctttaaatgtgatataaaaattacgaattttgatatttcagatcaatattcaattttttaaagtaaaatctg |
4752551 |
T |
|
| Q |
118 |
aatccagtaatgatgtcgaggagacctggaacttcttctagaagattcggtgataccaaatccaaatcttctccagttttgtcaattggccttataattg |
217 |
Q |
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| T |
4752550 |
aatccagtaatgatgtcgaggagacctggaacttcttctagaagattcggtgataccaaatccaaatcttctccagttttgtcaattggccttataattg |
4752451 |
T |
|
| Q |
218 |
tggtcagaatttatttccttattgttcattcataattcattgatttagatttacatcgtcattagcttaattaatcaatcaatctgattaattttgtttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4752450 |
tggtcagaatttatttccttattgttcattcataattcattgatttagatttacatcgtcattagcttaattaatcaatcaatctgattaattttgtttt |
4752351 |
T |
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| Q |
318 |
tacaatgtagggaggcttgtttctcattggttacttgtacaggggctcaggtttcaattccttctactgtttcttatttcaattatataatactgacacc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4752350 |
tacaatgtagggaggcttgtttctcattggttacttgtacaggggctcaggtttcaattccttctactatttcttatttcaattatataatactgacacc |
4752251 |
T |
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| Q |
418 |
gacacatttgattacattcaattctgtannnnnnnnnnnctttcttttcaaataactatggatgtgttagtgtcttgtctgtg |
500 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4752250 |
gacacatttgattacattcaattctgtattttattttttttttcttttcaaataactatcgatgtgttagtgtcttgtctgtg |
4752168 |
T |
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