View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9138_low_6 (Length: 502)
Name: NF9138_low_6
Description: NF9138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9138_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 38 - 483
Target Start/End: Original strand, 43388776 - 43389228
Alignment:
| Q |
38 |
cagagataaagataaatgaaattttcaaagtaagagggaatattagagatgtacaaatattattgttcatagagataatgaaatgtttaataagtgttag |
137 |
Q |
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| T |
43388776 |
cagagataaagacaaatgagattttcaaagtaggatggaatattagaggtgtacaaatattattgttcatagagataatgaaatgtttaataagtgttag |
43388875 |
T |
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| Q |
138 |
gagtgatgttgaaatattattgttggattttaattacttcatgacttgctagttagttagggacatatggtatcatttactccnnnnnnn-tattatgat |
236 |
Q |
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| T |
43388876 |
gagtgatgttgaaatattattgttggattttaattacatcatgacttgctagttagttagggacatatggtattatttactccaaaaaaaatattatgat |
43388975 |
T |
|
| Q |
237 |
ttgtttgtctaatagaaaaaatgaaacaagtctagctgaatctttctcaactagatatgagcttatttagccgttttgatatcaaaatggatttcaactc |
336 |
Q |
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| T |
43388976 |
ttgtttgtctaattggaaaaatgaaacaagtctagctgaatctttctcaactagatatgagcttatttagccgttttgatatcaaaatggatttcacctc |
43389075 |
T |
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| Q |
337 |
agaagatggatataaataaccaacatatttaacttaatttgaaacaaagaagaagcatatatgcagaattgatacagcaacaacaaaataaaaaa-gtat |
435 |
Q |
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| T |
43389076 |
aggagatggatataaataaccaacatatttaacttaatttgaaacaaagaagaagcgtatatgcacaattgatacagcaacaacaaaataaaaaaagtat |
43389175 |
T |
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| Q |
436 |
-----cagattaaataggtggcatttaggatgtaaaattgttaaatttgtgca |
483 |
Q |
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| T |
43389176 |
ttgatcagattaaataggtggcatttagggtgcaaaattgttaaatttgtgca |
43389228 |
T |
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