View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9139_high_1 (Length: 667)

Name: NF9139_high_1
Description: NF9139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9139_high_1
NF9139_high_1
[»] chr7 (1 HSPs)
chr7 (1-649)||(21843860-21844509)


Alignment Details
Target: chr7 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 649
Target Start/End: Complemental strand, 21844509 - 21843860
Alignment:
Q  1 cagtaatgtcttgaggtaaggtttgtatcgttcattgtagtcttactcgattcaaacgaaaaggatgtggtagtggttaaatttcaaccactagtattat 100  Q
    ||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21844509 cagtagtgtcttgaggtagggtttgtatcgtccattgtagtcttactcgattcaaacgaaaaggatgtggtagtggttcaatttcaaccactagtattat 21844410  T
Q  101 aaccttatctggggcatagaaattttaatttgtattgtagcatttaaatttttcaaattgtttcctaattttagctataactatgcaaatatcacccaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21844409 aaccttatctggggcatagaaattttaatttgtattgtagcatttaaatttttcaaattgtttcctatttttagctataactatgcaaatatcacccaat 21844310  T
Q  201 annnnnnnnn-aaggaaaattatcaccaaatatatatttcgatnnnnnnntatcattcaatatatattgcaaaaaccaccatctttttcctcaaaggaaa 299  Q
    |          |||||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21844309 attttttttttaaggaaaattatcaccaaatatatatttcg-ttaaaaattatcattcaatatatattgcaaaaaccaccatcttttccctcaaaggaaa 21844211  T
Q  300 gaaaaacccaccatctttagtgcaataaaatgtacaatctataatggtttcaaaaataaaatgaacaattgaaata-ttttgtattcatatcatttaatc 398  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| |||||||||||| |||||||||||||||||||||||    
T  21844210 gaaaaacccaccatctttagtgcaataaaatgtacaatatataatggttccaaatataaaatgcacaattgaaatacttttgtattcatatcatttaatc 21844111  T
Q  399 aatacaagtaattattcgaattcgacttctatatgaacattcacacacaccccattttgaacctcgtagaatctgaatttgttccnnnnnnnnnnccctc 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||    
T  21844110 aatacaagtaattattcgaattcgacttctatatgaacattcacacacaccccattttgaacctcgtagaatctgaatttgttcctttttttttcccctc 21844011  T
Q  499 aaaactaagggaatccaaagtcaccaatctacgtggatttgggtcctatgacttttattgtttgcccgttactccaaggcaaagtagaaagtgaccaact 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21844010 aaaactaagggaatccaaagtcaccaatctacgtggatttgggtcatatgacttttattgtttgcccgttactccaaggcaaagtagaaagtgaccaact 21843911  T
Q  599 tcataaagcatctaataaaacatacnnnnnnnaccttcttgacaacgctat 649  Q
    |||||||||||||||||||||||||       |||||||||||||||||||    
T  21843910 tcataaagcatctaataaaacatactttttttaccttcttgacaacgctat 21843860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University