View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9139_high_2 (Length: 356)
Name: NF9139_high_2
Description: NF9139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9139_high_2 |
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| [»] scaffold0349 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 27707864 - 27707957
Alignment:
| Q |
51 |
acagattcacccaaagaagaataataaccctacagctgcaaagagtatacaactaaaaagaaattcactgtgcctgatatgttacaaatcattt |
144 |
Q |
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| T |
27707864 |
acagtttcacccaaaaaagaataataatcctacaactgcaaagagcatacaacaaaaaagaaattcactgagcctgatacgtcaccaatcattt |
27707957 |
T |
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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 27727710 - 27727783
Alignment:
| Q |
71 |
ataataaccctacagctgcaaagagtatacaactaaaaagaaattcactgtgcctgatatgttacaaatcattt |
144 |
Q |
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| T |
27727710 |
ataataatcctacaactgcaaagagcatacaacaaaaaagaaattcactgagcctgatacgtcaccaatcattt |
27727783 |
T |
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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 40274814 - 40274765
Alignment:
| Q |
179 |
aagtagctattttaaatgaggcagcttgcttgcttagaattggatcccca |
228 |
Q |
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| T |
40274814 |
aagtagctattttagatgaggcagcttgcttgcttagaattggatcccca |
40274765 |
T |
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Target: scaffold0349 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 6289 - 6362
Alignment:
| Q |
71 |
ataataaccctacagctgcaaagagtatacaactaaaaagaaattcactgtgcctgatatgttacaaatcattt |
144 |
Q |
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| T |
6289 |
ataataatcctacaactgcaaagagcatacaacaaaaaagaaattcactgagcctgatacgtcaccaatcattt |
6362 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 1558766 - 1558820
Alignment:
| Q |
174 |
atcagaagtagctattttaaatgaggcagcttgcttgcttagaattggatcccca |
228 |
Q |
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| T |
1558766 |
atcataagtagctattttagatgaggcagcttgcttgcttaggtttggatcccca |
1558820 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 48769573 - 48769520
Alignment:
| Q |
174 |
atcagaagtagctattttaaatgaggcagcttgcttgcttagaattggatcccc |
227 |
Q |
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| T |
48769573 |
atcataagtagctattttagatgaggcagcttgcttgcttaggtttggatcccc |
48769520 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 26154960 - 26154906
Alignment:
| Q |
174 |
atcagaagtagctattttaaatgaggcagcttgcttgcttagaattggatcccca |
228 |
Q |
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| T |
26154960 |
atcataagtagcgattttagatgaggtagcttgcttgcttagatttggatcccca |
26154906 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 18979542 - 18979488
Alignment:
| Q |
174 |
atcagaagtagctattttaaatgaggcagcttgcttgcttagaattggatcccca |
228 |
Q |
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| T |
18979542 |
atcataagtatctattttagatgaggcagcttgcttgcttaggtttagatcccca |
18979488 |
T |
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