View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9139_low_1 (Length: 892)
Name: NF9139_low_1
Description: NF9139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9139_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 421 - 883
Target Start/End: Complemental strand, 13714020 - 13713546
Alignment:
| Q |
421 |
atttccatcattctttcacatcaacagtggtacttgcaagccaagttttaggtgaagtaaacatttttatttatgcaagtgtattatagttatttggttt |
520 |
Q |
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| T |
13714020 |
atttccatcattctttcacatcaacagtggtacttgcaagccaagttttaggtgaagtaaacatttttatttatgcaagtgtattatagttatttggttt |
13713921 |
T |
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| Q |
521 |
ggtatgtatgcatacacaatttgtccaaactaaacaagcttg------------agaatccattaatctcaaaactaaaaacacatacaatatgaatctc |
608 |
Q |
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| T |
13713920 |
ggtatgtatgcatacacaatttgtccaaattaaacaagcttgcacacaggcttgagaatccattaatctcaaaactaaaaacacatacaatatgaatctc |
13713821 |
T |
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| Q |
609 |
tctgtatactataacatatatacagaatggccacatccatttatttaattcacattaaacaccacacttcttatctatcttaccttacttgtcatcaaaa |
708 |
Q |
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| T |
13713820 |
tctgtatactataacatatatacagaatggccacatccatttatttaattcacattaaacaccacacttcttatctatcttaccttacttgtcatcaaaa |
13713721 |
T |
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| Q |
709 |
ctaccatggttgaagctcaatggcacttcaaaaggactaatattaaaaggcctctgaccaatataattaccaggtggatcatagttacaactaataatgg |
808 |
Q |
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| T |
13713720 |
ctaccatggttgaagctcaatggcacttcaaaaggactaatatcaaaaggcctctgaccaatataattaccaggtggatcatagttacaactaataatgg |
13713621 |
T |
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| Q |
809 |
tgctacggccatcattacactttaccttagcacatccaacccgaaccgaatcgcgccagacaacttgagtataat |
883 |
Q |
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| T |
13713620 |
tgctacgaccatcattacacttaaccttagcacatccaacccgaaccgaatcgcgccagacaacttgagtataat |
13713546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 13714110 - 13714013
Alignment:
| Q |
18 |
acattatgtgtctcacctattcaagtggaaaggggtcatattggagttgttagaaaagagaattttgaagcagccactaaaagaggagctattcccat |
115 |
Q |
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| T |
13714110 |
acattatgtgtctcacctattcaagtggaaaggggtcatattggagttgttagaaaagagaattttgaagcagccactaaaagaggagctatttccat |
13714013 |
T |
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