View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9139_low_4 (Length: 356)

Name: NF9139_low_4
Description: NF9139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9139_low_4
NF9139_low_4
[»] chr6 (2 HSPs)
chr6 (51-144)||(27707864-27707957)
chr6 (71-144)||(27727710-27727783)
[»] chr2 (1 HSPs)
chr2 (179-228)||(40274765-40274814)
[»] scaffold0349 (1 HSPs)
scaffold0349 (71-144)||(6289-6362)
[»] chr4 (1 HSPs)
chr4 (174-228)||(1558766-1558820)
[»] chr1 (1 HSPs)
chr1 (174-227)||(48769520-48769573)
[»] chr8 (1 HSPs)
chr8 (174-228)||(26154906-26154960)
[»] chr5 (1 HSPs)
chr5 (174-228)||(18979488-18979542)


Alignment Details
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 27707864 - 27707957
Alignment:
Q  51 acagattcacccaaagaagaataataaccctacagctgcaaagagtatacaactaaaaagaaattcactgtgcctgatatgttacaaatcattt 144  Q
    |||| |||||||||| ||||||||||| |||||| |||||||||| ||||||| |||||||||||||||| |||||||| || || ||||||||    
T  27707864 acagtttcacccaaaaaagaataataatcctacaactgcaaagagcatacaacaaaaaagaaattcactgagcctgatacgtcaccaatcattt 27707957  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 27727710 - 27727783
Alignment:
Q  71 ataataaccctacagctgcaaagagtatacaactaaaaagaaattcactgtgcctgatatgttacaaatcattt 144  Q
    ||||||| |||||| |||||||||| ||||||| |||||||||||||||| |||||||| || || ||||||||    
T  27727710 ataataatcctacaactgcaaagagcatacaacaaaaaagaaattcactgagcctgatacgtcaccaatcattt 27727783  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 40274814 - 40274765
Alignment:
Q  179 aagtagctattttaaatgaggcagcttgcttgcttagaattggatcccca 228  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40274814 aagtagctattttagatgaggcagcttgcttgcttagaattggatcccca 40274765  T

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Target: scaffold0349 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 6289 - 6362
Alignment:
Q  71 ataataaccctacagctgcaaagagtatacaactaaaaagaaattcactgtgcctgatatgttacaaatcattt 144  Q
    ||||||| |||||| |||||||||| ||||||| |||||||||||||||| |||||||| || || ||||||||    
T  6289 ataataatcctacaactgcaaagagcatacaacaaaaaagaaattcactgagcctgatacgtcaccaatcattt 6362  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 1558766 - 1558820
Alignment:
Q  174 atcagaagtagctattttaaatgaggcagcttgcttgcttagaattggatcccca 228  Q
    |||| |||||||||||||| ||||||||||||||||||||||  |||||||||||    
T  1558766 atcataagtagctattttagatgaggcagcttgcttgcttaggtttggatcccca 1558820  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 48769573 - 48769520
Alignment:
Q  174 atcagaagtagctattttaaatgaggcagcttgcttgcttagaattggatcccc 227  Q
    |||| |||||||||||||| ||||||||||||||||||||||  ||||||||||    
T  48769573 atcataagtagctattttagatgaggcagcttgcttgcttaggtttggatcccc 48769520  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 26154960 - 26154906
Alignment:
Q  174 atcagaagtagctattttaaatgaggcagcttgcttgcttagaattggatcccca 228  Q
    |||| ||||||| |||||| |||||| |||||||||||||||| |||||||||||    
T  26154960 atcataagtagcgattttagatgaggtagcttgcttgcttagatttggatcccca 26154906  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 18979542 - 18979488
Alignment:
Q  174 atcagaagtagctattttaaatgaggcagcttgcttgcttagaattggatcccca 228  Q
    |||| ||||| |||||||| ||||||||||||||||||||||  || ||||||||    
T  18979542 atcataagtatctattttagatgaggcagcttgcttgcttaggtttagatcccca 18979488  T

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