View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9139_low_6 (Length: 220)
Name: NF9139_low_6
Description: NF9139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9139_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 14152842 - 14153027
Alignment:
| Q |
16 |
acagatgcaatttccacaatcacatggtagtctttgttaatactcttaatggctacattagccaacacagcataacggtctgctggatccaatatccacc |
115 |
Q |
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| T |
14152842 |
acagatgcaatttccacaatcacatggtagtctttgttaatactcttaatggctacattagccaacacagcataacggtctgctgggtccaatatccacc |
14152941 |
T |
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| Q |
116 |
tatacatagctttctgatttttatttttcaaagtcccattagtataaatacatcataaatatcatatacattagtattttttatataattagt |
208 |
Q |
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| T |
14152942 |
tatacatagctttctgattt---tttttcaaagtcccattagtataaatacatc----atatcttatacattagtattttttatataattagt |
14153027 |
T |
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