View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9140_low_1 (Length: 432)
Name: NF9140_low_1
Description: NF9140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9140_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 419
Target Start/End: Original strand, 4315797 - 4316204
Alignment:
| Q |
16 |
cagtattttatgcattgaatattgatatcttgattgtttcaaaaacgtatattctgctccgtatgaagaagccctaatttttaactctgttggaatagga |
115 |
Q |
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| T |
4315797 |
cagtattttatgcattgaatattgatatcttgattgtttcaaaaacgtatattctgctcagtatgaagatgccctaatttttaactctgttggaatagga |
4315896 |
T |
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| Q |
116 |
atagcagtcaataaccaa----ttaaaatatcttgtcnnnnnnnnnnnnn----ccaatattaaaatagtataaatctctagttagctgcaacattcaaa |
207 |
Q |
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| T |
4315897 |
atagcagtcaataaccaaccaattaaaatatcttgtcgaaaaagaaaaaaaaaaccaatattaaaatagtat----ctctagttagctgcaatattcaaa |
4315992 |
T |
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| Q |
208 |
atgcctaatgtgttttataagatacaaaaataacgcttaagcccaagataaaatttcatcgatagaaaacaattaaattcaagtggttaatgagcttcat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||| |||||||||||||||||||||||||||||| |
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| T |
4315993 |
atgcctaatgtgttttataagatacaaaaataacgcttaagccgaagataaaatttcattgataaaaaataattaaattcaagtggttaatgagcttcat |
4316092 |
T |
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| Q |
308 |
caaataagaatcgtatttatctcacgatcgaactccggattacctggacctcttcattcccctgaaaaccgaagggttaacaaaaagaaaatcattgatc |
407 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4316093 |
caaataagaatcgtatttacttcacgatcgaactccggattaccaggacctcttcattcccctgaaaaccgaagggttaacaaaaagaaaatcattgatc |
4316192 |
T |
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| Q |
408 |
aacagtataatc |
419 |
Q |
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||||||| |||| |
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| T |
4316193 |
aacagtaaaatc |
4316204 |
T |
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