View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9140_low_3 (Length: 308)
Name: NF9140_low_3
Description: NF9140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9140_low_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 3907568 - 3907275
Alignment:
| Q |
15 |
attaaaccaattacatgataatacatggaccgttaaatcatgattagataaattcaagttccaactttggtaaatcaagtctgtaatgataatacatagt |
114 |
Q |
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| T |
3907568 |
attaaaccaattacatgataatacatggaccgttaaatcatgattagataaattcaagttccaactttggtaaatcaagtctgtaatgataatacatagt |
3907469 |
T |
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| Q |
115 |
ggaaacatatgccttctaatcttgatccatcagttcggtacttaacaatgactatatgtaattgtgtgaatccggaacatcacgtgtcaaacacaattat |
214 |
Q |
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| T |
3907468 |
ggaaacatatgccttctaatcttgatccatcagttcggtacttaacaatgactatatgtaattgtgtgaatccggaacatcacgtgtcaaacacaattat |
3907369 |
T |
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| Q |
215 |
gtgatatgaaccattgaatcaagattggatagccgatgatccaactttgttaaattaagcccgtaattatataatactaaatcaaagcatgagc |
308 |
Q |
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| T |
3907368 |
gtgatatgaaccattgaatcaagattggatagccgatgatccaactttgttaaattaagcccgtaatgatataatactaaatcaaagcatgagc |
3907275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 3923987 - 3923684
Alignment:
| Q |
15 |
attaaaccaattacatgataatacatggaccgttaaatcatgattagataaattcaagttccaactttggtaaatcaagtctgtaatgataatacatagt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
3923987 |
attaaaccaattacatgataatacatggaccgttaaatcttgattagataaattcaagttccaactttggtaaatcaagtctgtaatgatgatacaaagt |
3923888 |
T |
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| Q |
115 |
ggaaacatatgccttctaatcttgatccatcagttcggtacttaacaatgactatatgtaattgtgtgaa----------tccggaacatcacgtgtcaa |
204 |
Q |
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| T |
3923887 |
caaaacatatgccttctactcttgatccatcagttcggtacttatcagtaactatgtgtaattgtgtgaatatggaacattacggaacatcacacgtcaa |
3923788 |
T |
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| Q |
205 |
acacaattatgtgatatgaaccattgaatcaagattggatagccgatgatccaactttgttaaattaagcccgtaattatataatactaaatcaaagcat |
304 |
Q |
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| T |
3923787 |
acacaattttgtgatctgaaccattgaatcaagattggatagcccatgatccaactttgttaaatcaaacccataatgatataatactaaatcaaagcat |
3923688 |
T |
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| Q |
305 |
gagc |
308 |
Q |
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|||| |
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| T |
3923687 |
gagc |
3923684 |
T |
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