View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9140_low_5 (Length: 298)
Name: NF9140_low_5
Description: NF9140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9140_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 15022184 - 15022452
Alignment:
| Q |
11 |
gaagcagagagatggagattgggtggctatgatctcaccttcaaattccaagtaagaatattacattgatgatgaaaatgaatgttagttaaaaccattg |
110 |
Q |
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| T |
15022184 |
gaagccgagagatggagattgggtggctatgatctcaccttcaaattccaagtaagaatattacattgatgatgaaaatgaatgttagttaaaaccattg |
15022283 |
T |
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| Q |
111 |
ctataatgttaattaattccaaattatatgaactatgaaattggatttaatttattcttttaattgattatatgaagtgttaaagcttgtcttctcaatg |
210 |
Q |
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| T |
15022284 |
ctataatgttaattaattccaaattatatgaactatgaaattggatttaatttattcttttaattgattatatgaagtgttaaagcttgtcttctcaatg |
15022383 |
T |
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| Q |
211 |
agttctattatctacaaactggtgatactgcaaaacttcctctactttgccattaccctgtcaaggtat |
279 |
Q |
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| T |
15022384 |
agttctattatctacaaactggtgatactgcaaaacttcctctactttgccattaccctgtcaaggtat |
15022452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 21363395 - 21363464
Alignment:
| Q |
213 |
ttctattatctacaaactggtgatactgca---aaacttcctctactttgccattaccctgtcaaggtat |
279 |
Q |
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| T |
21363395 |
ttctattatcaacaaactggtgatactgctgccatacttcctctgctttgccattaccctgtcaaggtat |
21363464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 21363187 - 21363233
Alignment:
| Q |
22 |
atggagattgggtggctatgatctcaccttcaaattccaagtaagaa |
68 |
Q |
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| T |
21363187 |
atggtgattgggttgctatgatctcaccttcaaattccaagtaagaa |
21363233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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