View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9141_low_1 (Length: 528)
Name: NF9141_low_1
Description: NF9141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9141_low_1 |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 118 - 528
Target Start/End: Complemental strand, 43602310 - 43601900
Alignment:
| Q |
118 |
aatacaaacacatgctgagtgttggcatcaataataattttaaagatgaaagtaattgaatggaacccatgcatcagtgtacgacactaacacatgtcag |
217 |
Q |
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| T |
43602310 |
aatacaaacacatgctgagtgttggcatcaataataattttaaagatgaaagtaattgaatggaacccatgcatcagtgtacgacactaacacatgtcag |
43602211 |
T |
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| Q |
218 |
acattagacacatattcaatgtgaaatctccgtacatatgtatgcgcaattctctagctaaaggtaaaggcaatcaa-taacttcagcagaagaagacta |
316 |
Q |
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| T |
43602210 |
atattagacacatattcaatgtgaaatctcggtacatatgtatgcgcaattctctagctaaaggtaaaggcaatcaactaacttcagcagaagaagacta |
43602111 |
T |
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| Q |
317 |
atttctctttaattaatcagtaagaatcaaagcatccaaagccaatacatgtgtcaccaaatttttctaccctggttaagttaagtggataacaattcta |
416 |
Q |
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| T |
43602110 |
atttctctttaattaatcagtaagaatcaaagcatccaaagccaatacatgt-tcaccaaatttttctaccctggttaagttaagtggataacgattcta |
43602012 |
T |
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| Q |
417 |
taaattaatagctctggcacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcagagacaactttatcatgtgcggggctgtgtt |
516 |
Q |
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| T |
43602011 |
taaattaatagctctggcacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcagagacaactttatcatgtgcggggctgtgtt |
43601912 |
T |
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| Q |
517 |
ttggtgcagaaa |
528 |
Q |
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| T |
43601911 |
ttggtgcagaaa |
43601900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 43602620 - 43602495
Alignment:
| Q |
1 |
atccatggcagctgctagtgaaataagtaaactcatgagaagtgactaaacttgagaatacaagcacatgctattgcttttgatataagagtgtctactc |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43602620 |
atccatggcagctgctagtgaaataagtaaactgatgagaagtgactaaacttgagaatacaagcacatgctattgcatttgatataagagtgtctactc |
43602521 |
T |
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| Q |
101 |
ttggcctatatagcactaatacaaac |
126 |
Q |
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| T |
43602520 |
ttggcctatatagcactaatacaaac |
43602495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 434 - 528
Target Start/End: Original strand, 22436220 - 22436314
Alignment:
| Q |
434 |
cacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcagagacaactttatcatgtgcggggctgtgttttggtgcagaaa |
528 |
Q |
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||||||||||| ||||||||| ||||||||||||||| |||||| ||| | |||| ||||||||||||||||||| | |||||||||||||||| |
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| T |
22436220 |
cacgtgatgcatgtgacagaccgcaaattattgtcaattggaaccgttataagaggcaactttatcatgtgcgggagtatgttttggtgcagaaa |
22436314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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