View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9141_low_2 (Length: 256)

Name: NF9141_low_2
Description: NF9141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9141_low_2
NF9141_low_2
[»] scaffold0137 (1 HSPs)
scaffold0137 (19-248)||(35958-36187)
[»] chr3 (5 HSPs)
chr3 (26-248)||(3924048-3924270)
chr3 (137-177)||(50376174-50376214)
chr3 (142-175)||(9279802-9279835)
chr3 (132-176)||(2082097-2082141)
chr3 (43-99)||(50402650-50402706)
[»] chr5 (5 HSPs)
chr5 (36-175)||(9634869-9635007)
chr5 (131-177)||(38516609-38516655)
chr5 (36-93)||(20981271-20981328)
chr5 (38-174)||(40213811-40213946)
chr5 (36-88)||(43283422-43283474)
[»] chr4 (3 HSPs)
chr4 (35-96)||(26275540-26275601)
chr4 (132-175)||(48244387-48244430)
chr4 (48-120)||(34581592-34581664)
[»] chr1 (6 HSPs)
chr1 (36-177)||(7991519-7991660)
chr1 (130-176)||(7210566-7210612)
chr1 (36-99)||(40318748-40318811)
chr1 (36-96)||(3950674-3950734)
chr1 (36-96)||(7347694-7347754)
chr1 (50-98)||(49825872-49825920)
[»] chr2 (4 HSPs)
chr2 (132-175)||(35849470-35849513)
chr2 (44-97)||(39597586-39597639)
chr2 (132-177)||(38766711-38766756)
chr2 (129-177)||(1163355-1163403)
[»] chr7 (7 HSPs)
chr7 (131-177)||(27091724-27091770)
chr7 (131-177)||(27186531-27186577)
chr7 (36-96)||(42114866-42114926)
chr7 (129-176)||(48517365-48517412)
chr7 (132-174)||(34925253-34925295)
chr7 (132-177)||(23117278-23117323)
chr7 (132-173)||(28071501-28071542)
[»] chr6 (4 HSPs)
chr6 (36-95)||(15724717-15724775)
chr6 (132-178)||(31738973-31739019)
chr6 (36-177)||(1912425-1912566)
chr6 (37-156)||(2766868-2766985)
[»] chr8 (2 HSPs)
chr8 (132-178)||(19914107-19914153)
chr8 (79-175)||(41686197-41686293)


Alignment Details
Target: scaffold0137 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 36187 - 35958
Alignment:
Q  19 acagcggcgcgtagcagatttgatcaaatcgctattgttccggaatacgctatttggtataaaatattgtgaaatagcagccacagtggcgctgtagcac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36187 acagcggcgcgtagcagatttgatcaaatcgctattgttccggaatacgctatttggtataaaatattgtgaaatagcagccacagtggcgctgtagcac 36088  T
Q  119 tggtgcaaaccgaaattggaacaaaccgctattttccacaatctgcaattgacaacactacgtgcaacatagtagaaactagaaactaaattgaaaacca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36087 tggtgcaaaccgaaattggaacaaaccgctattttccacaatctgcaattgacaacactacgtgcaacatagtagaaactagaaactaaattgaaaacca 35988  T
Q  219 tgattgcattactaatccaacagaataatc 248  Q
    |||||||||||||||||||||| |||||||    
T  35987 tgattgcattactaatccaacacaataatc 35958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 26 - 248
Target Start/End: Complemental strand, 3924270 - 3924048
Alignment:
Q  26 cgcgtagcagatttgatcaaatcgctattgttccggaatacgctatttggtataaaatattgtgaaatagcagccacagtggcgctgtagcactggtgca 125  Q
    |||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  3924270 cgcgtagcggatttgatcaaatcactattgttccggaatacactatttggtataaaatattgtgaaatagcagcctcagtggcgctgaagcactggtgca 3924171  T
Q  126 aaccgaaattggaacaaaccgctattttccacaatctgcaattgacaacactacgtgcaacatagtagaaactagaaactaaattgaaaaccatgattgc 225  Q
     ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3924170 taccgaaattggaacaaaccactattttccacaatctgcaattgacaacactacgtgcaacacagtagaaactagaaactaaattgaaaaccatgattgc 3924071  T
Q  226 attactaatccaacagaataatc 248  Q
    ||||||||||||||| |||||||    
T  3924070 attactaatccaacacaataatc 3924048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 50376214 - 50376174
Alignment:
Q  137 gaacaaaccgctattttccacaatctgcaattgacaacact 177  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  50376214 gaacaaaccgctattttctacgatctgcaattgacaacact 50376174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 175
Target Start/End: Complemental strand, 9279835 - 9279802
Alignment:
Q  142 aaccgctattttccacaatctgcaattgacaaca 175  Q
    ||||||| ||||||||||||||||||||||||||    
T  9279835 aaccgctgttttccacaatctgcaattgacaaca 9279802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 2082097 - 2082141
Alignment:
Q  132 aattggaacaaaccgctattttccacaatctgcaattgacaacac 176  Q
    |||| ||||||||||||||||||||| | || |||||||||||||    
T  2082097 aatttgaacaaaccgctattttccacgagctacaattgacaacac 2082141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 50402706 - 50402650
Alignment:
Q  43 caaatcgctattgttccggaatacgctatttggtataaaatattgtgaaatagcagc 99  Q
    |||||| ||||||||||| |||| ||||||| ||||||| | |||| ||||||||||    
T  50402706 caaatcactattgttccgcaatatgctatttagtataaagtgttgtcaaatagcagc 50402650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 175
Target Start/End: Complemental strand, 9635007 - 9634869
Alignment:
Q  36 atttgatcaaatcgctattgttccggaatacgctatttggtataaaatattgtgaaatagcagccacagtggcgctgtagcactggtgcaaaccgaaatt 135  Q
    |||||| ||||| |||||||||||| | ||| |||||| |||||||||||| |||||||||| | | || |||||| ||||| || |||  | || ||||    
T  9635007 atttgaacaaatggctattgttccgca-tacactattttgtataaaatattttgaaatagcaactatagcggcgctatagcaatgttgcgtagcggaatt 9634909  T
Q  136 ggaacaaaccgctattttccacaatctgcaattgacaaca 175  Q
     ||||||||||||||||||   ||||||||||||||||||    
T  9634908 tgaacaaaccgctattttctgtaatctgcaattgacaaca 9634869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 38516609 - 38516655
Alignment:
Q  131 aaattggaacaaaccgctattttccacaatctgcaattgacaacact 177  Q
    ||||| ||||||||||||||||||||| ||| ||| |||||||||||    
T  38516609 aaatttgaacaaaccgctattttccactatccgcagttgacaacact 38516655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 20981271 - 20981328
Alignment:
Q  36 atttgatcaaatcgctattgttccggaatacgctatttggtataaaatattgtgaaat 93  Q
    |||||| | |||| ||||||||| | |||||||||||| |||||||||||||| ||||    
T  20981271 atttgaactaatcactattgttctgcaatacgctatttagtataaaatattgtcaaat 20981328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 174
Target Start/End: Complemental strand, 40213946 - 40213811
Alignment:
Q  38 ttgatcaaatcgctattgttccggaatacgctatttggtataaaatattgtgaaatagcagccacagtggcgctgtagcactggtgcaaaccgaaattgg 137  Q
    |||| |||||| ||||||||| | |||||||||| | ||| ||||| |||| |||| | ||| | | ||| ||| |||||||| |||  | | |||||      
T  40213946 ttgaacaaatcactattgttc-gcaatacgctatgtagtacaaaatgttgtcaaatggtagctatattggtgctatagcactgttgcgtagcaaaattta 40213848  T
Q  138 aacaaaccgctattttccacaatctgcaattgacaac 174  Q
    |||||||| |||||||||||||| ||| |||||||||    
T  40213847 aacaaaccactattttccacaatatgcgattgacaac 40213811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 43283474 - 43283422
Alignment:
Q  36 atttgatcaaatcgctattgttccggaatacgctatttggtataaaatattgt 88  Q
    |||||| ||||||||| |||||||| |||||||||||||| | ||||| ||||    
T  43283474 atttgaacaaatcgctgttgttccgcaatacgctatttgggacaaaatgttgt 43283422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 26275601 - 26275540
Alignment:
Q  35 gatttgatcaaatcgctattgttccggaatacgctatttggtataaaatattgtgaaatagc 96  Q
    ||||||| |||||||||||||||||  |||||||||||| ||| ||||||||||||||||||    
T  26275601 gatttgaacaaatcgctattgttccaaaatacgctatttagtacaaaatattgtgaaatagc 26275540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 48244430 - 48244387
Alignment:
Q  132 aattggaacaaaccgctattttccacaatctgcaattgacaaca 175  Q
    |||| ||||||||||||| ||||||| |||||||||||||||||    
T  48244430 aatttgaacaaaccgctaatttccactatctgcaattgacaaca 48244387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 34581592 - 34581664
Alignment:
Q  48 cgctattgttccggaatacgctatttggtataaaatattgtgaaatagcagccacagtggcgctgtagcactg 120  Q
    |||||||||||||  ||||||||||| ||| ||||| |||| ||||||| || | ||| ||||| ||||||||    
T  34581592 cgctattgttccgtgatacgctatttagtacaaaatgttgtcaaatagcggctatagtagcgctatagcactg 34581664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 177
Target Start/End: Original strand, 7991519 - 7991660
Alignment:
Q  36 atttgatcaaatcgctattgttccggaatacgctatttggtataaaatattgtgaaatagcagccacagtggcgctgtagcactggtgcaaaccgaaatt 135  Q
    |||||| |||| | |||||||||||  |||||| |||| ||| | ||||||||||||||||||| | ||||||||| ||||| || |||  |  | ||||    
T  7991519 atttgaacaaaccactattgttccgtgatacgccatttagtacataatattgtgaaatagcagctagagtggcgctatagcagtgttgcttagtggaatt 7991618  T
Q  136 ggaacaaaccgctattttccacaatctgcaattgacaacact 177  Q
      ||||||||||||||| ||   |||||||||||||||||||    
T  7991619 ataacaaaccgctatttaccgtgatctgcaattgacaacact 7991660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 7210612 - 7210566
Alignment:
Q  130 gaaattggaacaaaccgctattttccacaatctgcaattgacaacac 176  Q
    |||||| || |||||| ||||||||||||||||||||||||||||||    
T  7210612 gaaatttgagcaaaccactattttccacaatctgcaattgacaacac 7210566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 40318748 - 40318811
Alignment:
Q  36 atttgatcaaatcgctattgttccggaatacgctatttggtataaaatattgtgaaatagcagc 99  Q
    |||||||||||| |||| |||||||  ||| || |||  |||||||||||||||||||||||||    
T  40318748 atttgatcaaattgctactgttccgtgatatgcaattaagtataaaatattgtgaaatagcagc 40318811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 3950674 - 3950734
Alignment:
Q  36 atttgatcaaatcgctattgttccggaatacgctatttggtataaaatattgtgaaatagc 96  Q
    |||||| |||||| |||||||||||  ||||||||||| |||  ||||| |||||||||||    
T  3950674 atttgaacaaatcactattgttccgcgatacgctatttagtaccaaataatgtgaaatagc 3950734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 7347694 - 7347754
Alignment:
Q  36 atttgatcaaatcgctattgttccggaatacgctatttggtataaaatattgtgaaatagc 96  Q
    |||||| ||||| |||||||||  | ||||| |||||| ||| ||||||||||||||||||    
T  7347694 atttgaacaaattgctattgttttgcaatacactatttagtacaaaatattgtgaaatagc 7347754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 49825872 - 49825920
Alignment:
Q  50 ctattgttccggaatacgctatttggtataaaatattgtgaaatagcag 98  Q
    ||||||||| | ||||| |||||| ||| ||||||||||||||||||||    
T  49825872 ctattgttctgcaatacactatttagtacaaaatattgtgaaatagcag 49825920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 35849513 - 35849470
Alignment:
Q  132 aattggaacaaaccgctattttccacaatctgcaattgacaaca 175  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  35849513 aatttgaacaaaccgctattttccacaatctgcaattgacaaca 35849470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 39597586 - 39597639
Alignment:
Q  44 aaatcgctattgttccggaatacgctatttggtataaaatattgtgaaatagca 97  Q
    |||||||||||||||||  ||||||||||| ||| |||||||||||||||||||    
T  39597586 aaatcgctattgttccgcgatacgctatttagtacaaaatattgtgaaatagca 39597639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 38766756 - 38766711
Alignment:
Q  132 aattggaacaaaccgctattttccacaatctgcaattgacaacact 177  Q
    |||| ||||||||||||||||| | | |||||||||||||||||||    
T  38766756 aatttgaacaaaccgctattttacgcgatctgcaattgacaacact 38766711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 1163355 - 1163403
Alignment:
Q  129 cgaaattggaacaaaccgctattttccacaatctgcaattgacaacact 177  Q
    ||||||| |||||| || ||||||||||| |||| ||||||||||||||    
T  1163355 cgaaatttgaacaatccactattttccaccatctacaattgacaacact 1163403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 27091724 - 27091770
Alignment:
Q  131 aaattggaacaaaccgctattttccacaatctgcaattgacaacact 177  Q
    ||||| || |||||||||||||||||||||||| |||||||||||||    
T  27091724 aaatttgatcaaaccgctattttccacaatctgtaattgacaacact 27091770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 27186577 - 27186531
Alignment:
Q  131 aaattggaacaaaccgctattttccacaatctgcaattgacaacact 177  Q
    ||||| || |||||||||||||||||||||||| |||||||||||||    
T  27186577 aaatttgatcaaaccgctattttccacaatctgtaattgacaacact 27186531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 42114866 - 42114926
Alignment:
Q  36 atttgatcaaatcgctattgttccggaatacgctatttggtataaaatattgtgaaatagc 96  Q
    ||||||||||||||||||||||||  |||||||||||  |||  ||||||||| |||||||    
T  42114866 atttgatcaaatcgctattgttccacaatacgctattcagtagtaaatattgtcaaatagc 42114926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 48517412 - 48517365
Alignment:
Q  129 cgaaattggaacaaaccgctattttccacaatctgcaattgacaacac 176  Q
    ||||||| ||||||||||||||||||||  || |||||||||||||||    
T  48517412 cgaaatttgaacaaaccgctattttccatcatttgcaattgacaacac 48517365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 34925295 - 34925253
Alignment:
Q  132 aattggaacaaaccgctattttccacaatctgcaattgacaac 174  Q
    |||| |||||||| |||||||||||| ||||||||||||||||    
T  34925295 aatttgaacaaactgctattttccacgatctgcaattgacaac 34925253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 23117323 - 23117278
Alignment:
Q  132 aattggaacaaaccgctattttccacaatctgcaattgacaacact 177  Q
    |||| ||||||||| ||||||||| ||||| |||||||||||||||    
T  23117323 aatttgaacaaaccactattttccgcaatccgcaattgacaacact 23117278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 28071501 - 28071542
Alignment:
Q  132 aattggaacaaaccgctattttccacaatctgcaattgacaa 173  Q
    |||| |||||||||||||||| ||||||||||| ||||||||    
T  28071501 aatttgaacaaaccgctatttcccacaatctgcgattgacaa 28071542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 15724775 - 15724717
Alignment:
Q  36 atttgatcaaatcgctattgttccggaatacgctatttggtataaaatattgtgaaatag 95  Q
    |||||| |||||| ||||||||||| | |||||||||||||||||||| |||| ||||||    
T  15724775 atttgaacaaatccctattgttccgta-tacgctatttggtataaaatgttgtcaaatag 15724717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 31738973 - 31739019
Alignment:
Q  132 aattggaacaaaccgctattttccacaatctgcaattgacaacacta 178  Q
    |||| ||||||||| ||||||  ||||||||||||||||||||||||    
T  31738973 aattagaacaaaccactatttatcacaatctgcaattgacaacacta 31739019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 1912566 - 1912425
Alignment:
Q  36 atttgatcaaatcgctattgttccggaatacgctatttggtataaaatattgtgaaatagcagccacagtggcgctgtagcactggtgcaaaccgaaatt 135  Q
    |||||| |||||||||||||||| |  |||  |||||| ||| ||| |||||| |||||||  | | |||| |||| |||||| | |||| | || ||||    
T  1912566 atttgaacaaatcgctattgttctgcgatatactatttagtacaaattattgtcaaatagcgactatagtgacgctatagcaccgttgcatagcggaatt 1912467  T
Q  136 ggaacaaaccgctattttccacaatctgcaattgacaacact 177  Q
     ||||||||| ||||||||| | ||| | |||||||| ||||    
T  1912466 tgaacaaacctctattttccgcgatccgtaattgacaccact 1912425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 156
Target Start/End: Original strand, 2766868 - 2766985
Alignment:
Q  37 tttgatcaaatcgctattgttccggaatacgctatttggtataaaatattgtgaaatagcagccacagtggcgctgtagcactggtgcaaaccgaaattg 136  Q
    ||||| |||||| ||||||||  |  ||||| ||||| |||||||||||||| |||||| ||||| ||  || || ||||||||  |||  ||| ||||     
T  2766868 tttgaacaaatctctattgttatgtgatacgttatttagtataaaatattgtcaaatagtagccatagaagcactatagcactg--gcatcccgcaattc 2766965  T
Q  137 gaacaaaccgctattttcca 156  Q
    ||||||||| ||||||||||    
T  2766966 gaacaaaccactattttcca 2766985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 19914107 - 19914153
Alignment:
Q  132 aattggaacaaaccgctattttccacaatctgcaattgacaacacta 178  Q
    |||| ||||||||| ||||||  ||||||||||||||||||||||||    
T  19914107 aattagaacaaaccactatttatcacaatctgcaattgacaacacta 19914153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 41686293 - 41686197
Alignment:
Q  79 aaaatattgtgaaatagcagccacagtggcgctgtagcactggtgcaaaccgaaattggaacaaaccgctattttccacaatctgcaattgacaaca 175  Q
    ||||||||||||| |||| || | || |||| | |||||||| |||| | ||||||| |||||||||||| |||||  | || |||||||| |||||    
T  41686293 aaaatattgtgaagtagctgctatagcggcgttatagcactgttgcatagcgaaatttgaacaaaccgctcttttcttcgatatgcaattgccaaca 41686197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University