View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9143_low_1 (Length: 762)
Name: NF9143_low_1
Description: NF9143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9143_low_1 |
 | |
|
| [»] scaffold0152 (2 HSPs) |
| | |
|
| [»] scaffold0515 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 11 - 494
Target Start/End: Complemental strand, 20116030 - 20115547
Alignment:
| Q |
11 |
cagagatgtagcaaggacccattttagtttccaattcattagaaagcttttctttgaaggtgtcaagggacataaatatgccgttgaagtcgtttccgga |
110 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20116030 |
cagagaagtagcaaggacccattttattttccaattcattagaaagcttttctttgaaggtgtcaagggacttaaatatgccgttgaagtcgtttccgga |
20115931 |
T |
|
| Q |
111 |
tagatcgttcaaagagacatcatattctggagattcatgattcaattctatacaaagcttttccacaaccttgataatttctgagatcaccaacaaggtg |
210 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20115930 |
tagatcgttcaaagagacatcatattcaggagattcatgattcaattctatacaaagcttttccacaaccttgataatttctgagatcaccaacaaggtg |
20115831 |
T |
|
| Q |
211 |
tttggtcctgaagagcaacctaagtctgcaactgagaatcttcttggatatagactgcagtagaggttggttatggctttgtctctcgaagattttgccc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20115830 |
tttggtcctgaagagcaacctaagtctgcaactgcgaatcttcttggatatagactgcagtagaggttggttatggctttgtctctcgaagattttgccc |
20115731 |
T |
|
| Q |
311 |
cagaaattaccttttgctatgtatatgcagccattggagaaaatttagtgtcaactagtaagaaacgtgtgcaaaaaacaactaacgtgaaactcgattt |
410 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| ||||||| |
|
|
| T |
20115730 |
cagaaattaccttttgctgtgtatatgcaaccattggagaaaatttagtgtcaactagtatgaaacgtgtgcaaaaaacaaccaacacgaaattcgattt |
20115631 |
T |
|
| Q |
411 |
ttagcttgagatttccgttgtattattttgaaagtcatattttaacatctaagcatgtctgcaaaaaatcgtgaaaaaattcaa |
494 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20115630 |
ttaggttgaaatttccgttgtattattttgaaagtcatattttaacatctaagcatgtctgcaaaaaatcgtgaaaaaattcaa |
20115547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 487 - 739
Target Start/End: Complemental strand, 20115515 - 20115264
Alignment:
| Q |
487 |
aaattcaacttctatatcacttttttcaactttatatatactgaaaacaatagaaggtcaaaaatacaaagaatatcaa-ttacagagttagaatatatg |
585 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||| || |
|
|
| T |
20115515 |
aaattcaacttttatatcacttttttcgactttatatatactgaaaacaatagaaggtcaaaaatataaagagtatcaaattacatagttagaatatgtg |
20115416 |
T |
|
| Q |
586 |
tttcatttacataatcatttcttagactttgtttataatataaggtcaatttgaacaattaaccctgtactttattttaaatttagttgcaaatctcaga |
685 |
Q |
| |
|
|| |||| | ||||||| |||||||||||| | || ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20115415 |
ctttttttaaaagatcattt--tagactttgtttgcattacaagttcaatttaaacaattaaccctatactttattttaaatttagttgcaaatctcaga |
20115318 |
T |
|
| Q |
686 |
cacacaaacattgagcagtgggaaaacacagttaagaaacatttctaatacaat |
739 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
20115317 |
cacacaaacattgagcagtgggaaaatacagataagaaacatttctaatacaat |
20115264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 45 - 318
Target Start/End: Original strand, 21943663 - 21943936
Alignment:
| Q |
45 |
ttcattagaaagcttttctttgaaggtgtcaagggacataaatatgccgttgaagtcgtttccggatagatcgttcaaagagacatcatattctggagat |
144 |
Q |
| |
|
||||||| |||| |||||||||||||| ||||||||| |||||| | |||||| |||||||||| ||||||||||||| | || | |||||| |||||| |
|
|
| T |
21943663 |
ttcattacaaagtttttctttgaaggtctcaagggacctaaatacgttgttgaaatcgtttccgggtagatcgttcaaaaataccttatattcgggagat |
21943762 |
T |
|
| Q |
145 |
tcatgattcaattctatacaaagcttttccacaaccttgataatttctgagatcaccaacaaggtgtttggtcctgaagagcaacctaagtctgcaactg |
244 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||| || ||||| || |||||||||||||| || ||| |||| ||||| ||||| ||||||||||| | |
|
|
| T |
21943763 |
tcatgattcaactcttgacaaagcttttccacaacatttataatctccgagatcaccaacaaagtatttagtccagaagaacaacccaagtctgcaacgg |
21943862 |
T |
|
| Q |
245 |
agaatcttcttggatatagactgcagtagaggttggttatggctttgtctctcgaagattttgccccagaaatt |
318 |
Q |
| |
|
|| ||||| ||| | | ||||| || ||||||||||||||| || |||||||| ||||||| ||||||| |
|
|
| T |
21943863 |
ctaagcttctaggaaacaagctgcaatacaggttggttatggctctgagtctcgaaggttttgccaaagaaatt |
21943936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 512
Target Start/End: Complemental strand, 11796855 - 11796814
Alignment:
| Q |
471 |
gcaaaaaatcgtgaaaaaattcaacttctatatcactttttt |
512 |
Q |
| |
|
|||||||||| |||| ||||| |||||||||||||||||||| |
|
|
| T |
11796855 |
gcaaaaaatcatgaataaattaaacttctatatcactttttt |
11796814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 5e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 5811426 - 5811656
Alignment:
| Q |
11 |
cagagatgtagcaaggacccattttagtttccaattcattagaaagcttttctttgaaggtgtcaagggacataaatatgccgttgaagtcgtttccgga |
110 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| ||||||| || ||||||||||||||||||||||||||||||| | ||||||| || ||||| | |
|
|
| T |
5811426 |
cagagaagtagcaaggacccatttcagtttccatttcattacgtagtttttctttgaaggtgtcaagggacataaatacgtcgttgaaatcatttcccgg |
5811525 |
T |
|
| Q |
111 |
tagatcgttcaaagagacatcatattctggagattcatgattcaattctatacaaagcttttccacaaccttgataatttctgagatcaccaacaaggtg |
210 |
Q |
| |
|
||||||||||||| |||| | |||||| ||||||| |||||| | |||| |||||||||||| ||||||||||||||||| ||||||||||| || ||| |
|
|
| T |
5811526 |
tagatcgttcaaaaagactttatattcgggagatttatgattaagttctcgacaaagcttttcaacaaccttgataatttcagagatcaccaagaaagtg |
5811625 |
T |
|
| Q |
211 |
tttggtcctgaagagcaacctaagtctgcaa |
241 |
Q |
| |
|
|||||||| |||||||||| |||||||||| |
|
|
| T |
5811626 |
tttggtccaaaagagcaacccaagtctgcaa |
5811656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 32627828 - 32628011
Alignment:
| Q |
58 |
ttttctttgaaggtgtcaagggacataaatatgccgttgaagtcgtttccggatagatcgttcaaagaga-catcatattctggagattcatgattcaat |
156 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| ||||||||| ||||| | ||||||||||||| | | ||| |||||| ||||||| |||||| | | |
|
|
| T |
32627828 |
ttttctttgaaaatgtcaagggacgtaaatatggtgttgaagtcatttcccggtagatcgttcaaatatatcat-atattcgggagatttatgattaagt |
32627926 |
T |
|
| Q |
157 |
tctatacaaagcttttccacaaccttgataatttctgagatcaccaacaaggtgtttggtcctgaagagcaacctaagtctgcaa |
241 |
Q |
| |
|
| | |||||||||||||||||| |||||||| ||| ||||||||||||| ||||||| ||| |||||||||||||||||||||| |
|
|
| T |
32627927 |
tttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgtttgatccagaagagcaacctaagtctgcaa |
32628011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 32709841 - 32709949
Alignment:
| Q |
133 |
tattctggagattcatgattcaattctatacaaagcttttccacaaccttgataatttctgagatcaccaacaaggtgtttggtcctgaagagcaaccta |
232 |
Q |
| |
|
||||| ||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||| | ||||||||| |||||||| || ||||||||||| | |
|
|
| T |
32709841 |
tattcgggagattcatgattcaactctcgacaaagcttttccacgaccttgataaattctgataccaccaacaaagtgtttggcccagaagagcaaccca |
32709940 |
T |
|
| Q |
233 |
agtctgcaa |
241 |
Q |
| |
|
||||||||| |
|
|
| T |
32709941 |
agtctgcaa |
32709949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 32704052 - 32704239
Alignment:
| Q |
58 |
ttttctttgaaggtgtcaagggacataaatatgccgttgaagtcgtttccggatagatcgttcaaagagacatcatat----tctggagattcatgattc |
153 |
Q |
| |
|
||||||||||| ||||| |||||| |||||| |||||||||||| || | ||||||||||||| |||| | |||| || ||||||| |||||| |
|
|
| T |
32704052 |
ttttctttgaacgtgtcgagggacctaaatacattgttgaagtcgttccctggtagatcgttcaaaaagaccttatatatattcaggagatttatgatta |
32704151 |
T |
|
| Q |
154 |
aattctatacaaagcttttccacaaccttgataatttctgagatcaccaacaaggtgtttggtcctgaagagcaacctaagtctgcaa |
241 |
Q |
| |
|
| ||| ||||| ||||||||||||||||||| | ||||||||| ||||||| ||||||||||| |||||||||| || ||||||| |
|
|
| T |
32704152 |
agctctcgacaaatcttttccacaaccttgatagtatctgagatcgccaacaaagtgtttggtccataagagcaacccaaatctgcaa |
32704239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 7298092 - 7298170
Alignment:
| Q |
163 |
caaagcttttccacaaccttgataatttctgagatcaccaacaaggtgtttggtcctgaagagcaacctaagtctgcaa |
241 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||||| | ||| ||||| ||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
7298092 |
caaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaa |
7298170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 27736752 - 27736975
Alignment:
| Q |
18 |
gtagcaaggacccattttagtttccaattcattagaaagcttttctttgaaggtgtcaagggacataaatatgccgttgaagtcgtttccggatagatcg |
117 |
Q |
| |
|
|||||| || || ||||||||||||| ||||| | || || ||||||||||||||||||||| | |||| | ||||||||| ||||| | |||||| |
|
|
| T |
27736752 |
gtagcacgggcctattttagtttccatttcatcacgtagtttctctttgaaggtgtcaagggacttgaatacgttgttgaagtcatttcccggtagatca |
27736851 |
T |
|
| Q |
118 |
ttcaaagagacatcatattctggagattcatgattcaattctatacaaagcttttccacaaccttgataatttctgagatcaccaacaaggtgtttggtc |
217 |
Q |
| |
|
|||||| | || | |||||| ||||||| ||||| || |||||| ||||||||| | |||||||||||||| |||||||||| |||||||| | |
|
|
| T |
27736852 |
ttcaaaaatactttatattcaggagatttatgatgatgcacttgacaaagtttttccacacctttgataatttctgatatcaccaacatagtgtttggcc |
27736951 |
T |
|
| Q |
218 |
ctgaagagcaacctaagtctgcaa |
241 |
Q |
| |
|
| |||||||||| |||||||||| |
|
|
| T |
27736952 |
caaaagagcaacccaagtctgcaa |
27736975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 464 - 511
Target Start/End: Original strand, 18603 - 18650
Alignment:
| Q |
464 |
catgtctgcaaaaaatcgtgaaaaaattcaacttctatatcacttttt |
511 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18603 |
catgcctgcaaaaaatcgtgaaaaaattcaacttctagatcacttttt |
18650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 464 - 511
Target Start/End: Original strand, 37429 - 37476
Alignment:
| Q |
464 |
catgtctgcaaaaaatcgtgaaaaaattcaacttctatatcacttttt |
511 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37429 |
catgcctgcaaaaaatcgtgaaaaaattcaacttctaggtcacttttt |
37476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0515 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0515
Description:
Target: scaffold0515; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 464 - 511
Target Start/End: Original strand, 11033 - 11080
Alignment:
| Q |
464 |
catgtctgcaaaaaatcgtgaaaaaattcaacttctatatcacttttt |
511 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11033 |
catgcctgcaaaaaatcgtgaaaaaattcaacttctaggtcacttttt |
11080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 465 - 510
Target Start/End: Original strand, 38037886 - 38037931
Alignment:
| Q |
465 |
atgtctgcaaaaaatcgtgaaaaaattcaacttctatatcactttt |
510 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
38037886 |
atgtctgcaaaaaatcatgaaaaaattcaacatctatgtcactttt |
38037931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 464 - 510
Target Start/End: Complemental strand, 11346824 - 11346778
Alignment:
| Q |
464 |
catgtctgcaaaaaatcgtgaaaaaattcaacttctatatcactttt |
510 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| ||||| |||||||| |
|
|
| T |
11346824 |
catgcctgcaaaaaaacgtgaaaaaattcaacctctatgtcactttt |
11346778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 510
Target Start/End: Original strand, 9256348 - 9256385
Alignment:
| Q |
473 |
aaaaaatcgtgaaaaaattcaacttctatatcactttt |
510 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
9256348 |
aaaaaatcgtgaaaaaattcaacatctacatcactttt |
9256385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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