View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9143_low_4 (Length: 592)
Name: NF9143_low_4
Description: NF9143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9143_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 570
Target Start/End: Complemental strand, 24041706 - 24041172
Alignment:
| Q |
18 |
acatcaggttagggtatagattgggatctttctttattcagaatagttacatgtatgaattttgctcaagattctttaattaacattggggattattatt |
117 |
Q |
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| T |
24041706 |
acattaggttagagtatagattgggatctttctttattaagaatagttacatgtatgaattttgttcaagattctttaattaatattggggattattatt |
24041607 |
T |
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| Q |
118 |
ttgaatgttaggttccaagacaccaatgaaagtgtaagtcccaactctagggaaccataccaacgtctcacgtataacggtcatgtgagctgcatttgtg |
217 |
Q |
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| T |
24041606 |
ttgaatgttaggttccaagaaacctatgaaagtgtaagtctccactctagggaaccataccaacgtctcacgtataacggtcatgtgagccacatttgtg |
24041507 |
T |
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| Q |
218 |
cgggaatacctcccttaagtgatgaggagaaatgtcatatatgaagtcagttacatgttagagtgtaagtccccactctaaggaaccataccaacatcta |
317 |
Q |
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| T |
24041506 |
cgggaatacctcccttaagtgatgaggag------------------cagttacatgttagagtgtaagtccccactctaaggaaccataccaacatcta |
24041425 |
T |
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| Q |
318 |
atgtatagcgcttatgtgcaccgagtttgagcgcgtatacctcccttgagtgatgaggagcaacatgacatatggagggatgtgaatcttcatcccataa |
417 |
Q |
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| T |
24041424 |
atgcatagcgcttatgcgcaccgagtttgagcgcgtatacctcccttgagtgatgaggagcaacatgacatatggagggatgtgaatcttcatcccatga |
24041325 |
T |
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| Q |
418 |
ggttaactatcgtttatttagtgcttaggtcataagtagtagtttgaattaaaccaacaaataggttaagagtaaccgaagaatccgtatcaccactaag |
517 |
Q |
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| T |
24041324 |
gattaactatcgtttatatagtgcttaggtcataagtagtagtttgaattaaaccaacaaataggttgagagtaaccgaagaatcggtatcaccactaag |
24041225 |
T |
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| Q |
518 |
atcctcaatcacaccatccatttacttttcaacgcaatcaaacaactcttgca |
570 |
Q |
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| T |
24041224 |
atcctgaatcacaccatccatttacttttcaacgcaatcaaacaactcttgca |
24041172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 399
Target Start/End: Original strand, 9804434 - 9804466
Alignment:
| Q |
367 |
gtgatgaggagcaacatgacatatggagggatg |
399 |
Q |
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| T |
9804434 |
gtgatgaggagcaacatgacatatggatggatg |
9804466 |
T |
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