View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9145_low_4 (Length: 239)
Name: NF9145_low_4
Description: NF9145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9145_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 27412628 - 27412838
Alignment:
| Q |
12 |
ggtgttggagttgctggtattactcatgaattggtggatgctattcatgaaaaatggatggttgatgaagttgttaagtttaagtttgattctcctcttt |
111 |
Q |
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| T |
27412628 |
ggtgttggagttgctggtattactcacgaattggtggatgctattcatgaaaaatggatggttgatgaagttgttaagtttaagtttgattctcctcttt |
27412727 |
T |
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| Q |
112 |
ctgctaatatgaaaagagctcatcaaattcttgaggttcaatgctccttccctctcacattatcattttacttatctctatttgacttatttgagcttat |
211 |
Q |
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| T |
27412728 |
ctgctaatatgaaaagagctaatcaaattcttgaggttcaatgctccttccctctcacattatcattttacttatctctatttgacttatttgagcttat |
27412827 |
T |
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| Q |
212 |
atactgaaata |
222 |
Q |
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||||||||||| |
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| T |
27412828 |
atactgaaata |
27412838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 52429006 - 52428826
Alignment:
| Q |
13 |
gtgttggagttgctggtattactcatgaattggtggatgctattcatgaaaaatggatggttgatgaagttgttaagtttaagtttgattctcctctttc |
112 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52429006 |
gtgttggagttgccggtattactcaggaattggtggatgctattcatgaaaaatggatggttgatgaagttgttaagtttaagtttgattctcctctctc |
52428907 |
T |
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| Q |
113 |
tgctaatatgaaaagagctcatcaaattcttgaggttcaatgctccttccctctcacattatcattttacttatctctatt |
193 |
Q |
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| T |
52428906 |
tgctaatatgaaaagagctcatcaaattctcgaggtttaatgctcattccctctcacattaccagtttacttatctatatt |
52428826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 21405081 - 21405113
Alignment:
| Q |
193 |
ttgacttatttgagcttatatactgaaataagt |
225 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
21405081 |
ttgacttatttgagcttatatactgacataagt |
21405113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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