View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9146_low_1 (Length: 564)
Name: NF9146_low_1
Description: NF9146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9146_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 13 - 541
Target Start/End: Original strand, 16329429 - 16329957
Alignment:
| Q |
13 |
attaccaactcctgatagtcaaaagacaagtgttcttgaaatgcatcacaaagattcaacatttgaacatatcagaaaccataaaacatatcagatagtc |
112 |
Q |
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| T |
16329429 |
attaccaactcctgatagtcaaaagacaagtgttcttgaaatgcgtcacaaagatacaacatttgaacatatcagaaaccataaaacgtatcagatcgtt |
16329528 |
T |
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| Q |
113 |
gaaaattttaaaaattccgtgtgctcagtgtgtgagaacagaagaccaaaatttgaattgatgaaagaattcacatatggggagctgcatgaagcaacgc |
212 |
Q |
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| T |
16329529 |
gaaaattttaaaaattctgtttgctcagtgtgtgataacagaaggccaaaatttgaattgatgaaagaattcacatacggggagctgcatgaagcaacac |
16329628 |
T |
|
| Q |
213 |
atggtttttcgccaaagaactatttgtcagaaggtggatttggttccgtttattggggaaagatgcaaggacttaagattgctgttaagaaacataaatt |
312 |
Q |
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| T |
16329629 |
atggtttttctcccaagaactatttgtcagaaggcggattcggttcggtttattggggaaagatgcaaggactcaagattgctgttaagaaacataaatt |
16329728 |
T |
|
| Q |
313 |
tgcaagcctccaaggagagaaagaattcaaatctgaagttaatgcactcaacaaagcaatacatgaaaatgtggtcatgctgctaggatcttgttcggag |
412 |
Q |
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| T |
16329729 |
tgcaagcctccaaggagagaaagaattcaaatctgaagttaatgcactcaacaaagcaatacatgaaaatgtggtcatgctgctaggatcttgttcggag |
16329828 |
T |
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| Q |
413 |
ggaaagaacagatttcttgtatatgaatttgtttgcaatggctcacttgatcaacatttatcgcgtaagagaaaaatgaactttgaaatagttcttgcaa |
512 |
Q |
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| T |
16329829 |
ggaaagaacagatttcttgtatatgaatttgtttgcaatggctcacttgatcaacatttatcgcgtaagagaaaaatgaactttgaaatagttcttgcaa |
16329928 |
T |
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| Q |
513 |
tgaataacagttattgtcatcaaactctt |
541 |
Q |
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| T |
16329929 |
tgaataacagttattgtcatcaaactctt |
16329957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 290 - 474
Target Start/End: Complemental strand, 2971246 - 2971062
Alignment:
| Q |
290 |
attgctgttaagaaacataaatttgcaagcctccaaggagagaaagaattcaaatctgaagttaatgcactcaacaaagcaatacatgaaaatgtggtca |
389 |
Q |
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| T |
2971246 |
attgctgttaagcaacataaaagtgcaagcttccaaggagagaaggaatttaggtctgaagttaatgtacttagaaaagcaagacatgagaatgttgtca |
2971147 |
T |
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| Q |
390 |
tgctgctaggatcttgttcggagggaaagaacagatttcttgtatatgaatttgtttgcaatggctcacttgatcaacatttatc |
474 |
Q |
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| T |
2971146 |
tgcttttaggttcatgttcagaaggaaataatcgacttcttgtttatgagtatgtctgcaatggctcacttgatcaacatctatc |
2971062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 344 - 479
Target Start/End: Complemental strand, 2926299 - 2926164
Alignment:
| Q |
344 |
tctgaagttaatgcactcaacaaagcaatacatgaaaatgtggtcatgctgctaggatcttgttcggagggaaagaacagatttcttgtatatgaatttg |
443 |
Q |
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||||||||| ||||| | | || ||||| |||||||||| | |||||| |||| ||||| ||||| || ||||| | || ||||||| ||||||| || |
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| T |
2926299 |
tctgaagttgatgcattaagcacagcaagacatgaaaatattgtcatgttgcttggatcatgttctgaaggaaaccataggcttcttgtttatgaatatg |
2926200 |
T |
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| Q |
444 |
tttgcaatggctcacttgatcaacatttatcgcgta |
479 |
Q |
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| T |
2926199 |
tctgcaatggttcactagaccaacatttatcacgta |
2926164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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