View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9146_low_3 (Length: 494)

Name: NF9146_low_3
Description: NF9146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9146_low_3
NF9146_low_3
[»] chr6 (59 HSPs)
chr6 (18-488)||(26649062-26649532)
chr6 (18-488)||(26755030-26755500)
chr6 (141-356)||(26961820-26962035)
chr6 (145-356)||(26952331-26952542)
chr6 (81-428)||(27681606-27681960)
chr6 (67-337)||(27608378-27608648)
chr6 (81-348)||(28795058-28795322)
chr6 (19-355)||(28788972-28789305)
chr6 (108-337)||(27601980-27602210)
chr6 (67-337)||(27715758-27716028)
chr6 (100-346)||(26886777-26887023)
chr6 (81-348)||(27695838-27696105)
chr6 (89-335)||(27674834-27675080)
chr6 (219-348)||(26805288-26805417)
chr6 (146-343)||(26851224-26851421)
chr6 (219-346)||(31287366-31287490)
chr6 (147-343)||(27662624-27662820)
chr6 (219-365)||(27590358-27590502)
chr6 (95-191)||(26658645-26658741)
chr6 (95-191)||(26764616-26764712)
chr6 (220-337)||(25513663-25513780)
chr6 (220-337)||(26145785-26145902)
chr6 (221-337)||(25547769-25547885)
chr6 (219-346)||(26625919-26626046)
chr6 (219-346)||(26731896-26732023)
chr6 (144-356)||(26980121-26980333)
chr6 (264-330)||(25491406-25491472)
chr6 (220-333)||(26638190-26638303)
chr6 (220-333)||(26744156-26744269)
chr6 (220-337)||(25582495-25582612)
chr6 (220-337)||(26058707-26058824)
chr6 (220-337)||(26078677-26078794)
chr6 (221-343)||(26876363-26876482)
chr6 (220-330)||(25485778-25485888)
chr6 (31-191)||(25485589-25485749)
chr6 (81-191)||(25076542-25076652)
chr6 (391-488)||(26887758-26887852)
chr6 (81-191)||(25513524-25513634)
chr6 (81-191)||(26145646-26145756)
chr6 (90-191)||(26805159-26805260)
chr6 (281-349)||(27657987-27658055)
chr6 (31-191)||(25547576-25547739)
chr6 (379-428)||(27608270-27608319)
chr6 (18-186)||(31287162-31287333)
chr6 (352-424)||(31287510-31287583)
chr6 (312-349)||(31290316-31290353)
chr6 (282-330)||(25076743-25076791)
chr6 (144-191)||(26638114-26638161)
chr6 (144-191)||(26744080-26744127)
chr6 (437-488)||(26876569-26876620)
chr6 (274-323)||(26826731-26826780)
chr6 (372-428)||(27715657-27715716)
chr6 (145-185)||(25582420-25582460)
chr6 (145-185)||(26058632-26058672)
chr6 (145-185)||(26078602-26078642)
chr6 (444-488)||(26808479-26808523)
chr6 (100-196)||(26826557-26826653)
chr6 (444-488)||(26851544-26851588)
chr6 (444-480)||(27662483-27662519)
[»] scaffold0419 (1 HSPs)
scaffold0419 (19-348)||(10122-10448)
[»] scaffold0277 (2 HSPs)
scaffold0277 (19-355)||(1931-2264)
scaffold0277 (81-355)||(10894-11165)
[»] chr1 (5 HSPs)
chr1 (81-335)||(265591-265845)
chr1 (219-330)||(28124889-28125000)
chr1 (219-330)||(28129920-28130031)
chr1 (397-488)||(28124731-28124819)
chr1 (397-488)||(28129762-28129850)
[»] chr8 (3 HSPs)
chr8 (81-337)||(29271097-29271353)
chr8 (69-330)||(22023913-22024174)
chr8 (358-424)||(22024204-22024270)
[»] scaffold0349 (2 HSPs)
scaffold0349 (67-337)||(15917-16187)
scaffold0349 (372-428)||(16229-16288)
[»] chr4 (16 HSPs)
chr4 (221-346)||(18676854-18676979)
chr4 (221-346)||(18696697-18696822)
chr4 (221-346)||(18686903-18687028)
chr4 (221-346)||(18721368-18721493)
chr4 (275-346)||(18652772-18652843)
chr4 (221-346)||(18728793-18728915)
chr4 (221-346)||(18726288-18726412)
chr4 (232-346)||(18682056-18682170)
chr4 (146-186)||(18682171-18682211)
chr4 (146-186)||(18687063-18687103)
chr4 (146-186)||(18726447-18726487)
chr4 (146-186)||(18652932-18652972)
chr4 (146-186)||(18677014-18677054)
chr4 (150-186)||(18696857-18696893)
chr4 (446-480)||(18696558-18696592)
chr4 (150-186)||(18728950-18728986)
[»] chr2 (1 HSPs)
chr2 (280-328)||(17990414-17990462)


Alignment Details
Target: chr6 (Bit Score: 467; Significance: 0; HSPs: 59)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 488
Target Start/End: Original strand, 26649062 - 26649532
Alignment:
Q  18 aaaatttattctgtagtgttttcaaatgtggatcatcttgttctcgaaaattgcaacctatttgatgaaagtctcctaataattctcaaatggtgtgtta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26649062 aaaatttattctgtagtgttttcaaatgtggatcatcttgttctcgaaaattgcaacctctttgatgaaagtctcctaataattctcaaatggtgtgtta 26649161  T
Q  118 atctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaatgtcaccatcttgttgaaattatcgtggacggctgtac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26649162 atctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaatgtcaccatcttgttgaaattatcgtggacggctgtac 26649261  T
Q  218 ctctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26649262 ctctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagt 26649361  T
Q  318 caggttcgttgttgttttatcttgcaatatatggtatttcatgtatataattggtagtgtaattattattatgttgtataaactaacagaaactacacaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26649362 caggttcgttgttgttttatcttgcaatatatggtatttcatgtatataattggtagtgtaattattattatgttgtataaactaacagaaactacacaa 26649461  T
Q  418 ggctggatgcattgaggagattcttatgccaaacggaatagaggggattccagattggttcgaacaccaaa 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26649462 ggctggatgcattgaggagattcttatgccaaacggaatagaggggattccagattggttcgaacaccaaa 26649532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 488
Target Start/End: Original strand, 26755030 - 26755500
Alignment:
Q  18 aaaatttattctgtagtgttttcaaatgtggatcatcttgttctcgaaaattgcaacctatttgatgaaagtctcctaataattctcaaatggtgtgtta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26755030 aaaatttattctgtagtgttttcaaatgtggatcatcttgttctcgaaaattgcaacctctttgatgaaagtctcctaataattctcaaatggtgtgtta 26755129  T
Q  118 atctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaatgtcaccatcttgttgaaattatcgtggacggctgtac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26755130 atctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaatgtcaccatcttgttgaaattatcgtggacggctgtac 26755229  T
Q  218 ctctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26755230 ctctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagt 26755329  T
Q  318 caggttcgttgttgttttatcttgcaatatatggtatttcatgtatataattggtagtgtaattattattatgttgtataaactaacagaaactacacaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26755330 caggttcgttgttgttttatcttgcaatatatggtatttcatgtatataattggtagtgtaattattattatgttgtataaactaacagaaactacacaa 26755429  T
Q  418 ggctggatgcattgaggagattcttatgccaaacggaatagaggggattccagattggttcgaacaccaaa 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26755430 ggctggatgcattgaggagattcttatgccaaacggaatagaggggattccagattggttcgaacaccaaa 26755500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 141 - 356
Target Start/End: Original strand, 26961820 - 26962035
Alignment:
Q  141 aagaacaatttcaaaattcttcccgagttccttagtgaatgtcaccatcttgttgaaattatcgtggacggctgtacctctcttgaggaaattaggggga 240  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||  ||  || |  |||| | ||| |  | ||||||||||||||| ||||    
T  26961820 aagaacaatttcaaaattcttcccgagtgccttagtgaatgtcaccgtcttggggagcttgtgttggatgactgcaagtttcttgaggaaattagaggga 26961919  T
Q  241 ttccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgttgttttatctt 340  Q
    ||||||||||||||  | |||||||||||||||||||||||||||||||||    ||||||||||| | |||||||||||||| ||||||||||||||||    
T  26961920 ttccaccaaatcttggacggctttctgcattgagatgtgaatcattgagtttggaaagtagaagaaggctattgagtcaggtttgttgttgttttatctt 26962019  T
Q  341 gcaatatatggtattt 356  Q
    ||||||||| ||||||    
T  26962020 gcaatatatagtattt 26962035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 145 - 356
Target Start/End: Original strand, 26952331 - 26952542
Alignment:
Q  145 acaatttcaaaattcttcccgagttccttagtgaatgtcaccatcttgttgaaattatcgtggacggctgtacctctcttgaggaaattagggggattcc 244  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| |||||    || ||||||||||| || ||||||||    
T  26952331 acaatttcaaaattcttcccgagtgccttagtgaatgccaccatcttgttgaagttatcgtggatggctgctattcccttgaggaaatcagagggattcc 26952430  T
Q  245 accaaatcttaaatggctttctgcattgaga-tgtgaatcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgttgttttatcttgca 343  Q
    ||| |||||  || | ||||||||| | ||| || || || ||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||    
T  26952431 accgaatctagaaagactttctgcagt-agattgcgagtcgttgagttccgcaagtagaagaatgctattgagtcaggtttgttgttgttttatcttgca 26952529  T
Q  344 atatatggtattt 356  Q
    |||||| ||||||    
T  26952530 atatatagtattt 26952542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 81 - 428
Target Start/End: Original strand, 27681606 - 27681960
Alignment:
Q  81 gatgaaagtctcctaataattctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaat 180  Q
    |||||| |||||| |||| ||||||| |||||||||||| ||| | |||||| |||| ||   | |||||||||||||||||| |||| |||| ||||||    
T  27681606 gatgaatgtctcccaatagttctcaagtggtgtgttaatatgacacatctagacttatcatttagcaatttcaaaattcttcctgagtgccttcgtgaat 27681705  T
Q  181 gtcaccatcttgttgaaattatcgtggacggctgtacctctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgaga-tgtg 279  Q
    |||||||||||||||||||||  |||    ||||    ||||||||||||||||| ||||||||||||||||| |||  ||||| ||| | || | |||     
T  27681706 gtcaccatcttgttgaaattaatgtgatgtgctgcgagtctcttgaggaaattagagggattccaccaaatctaaaagagctttgtgc-tagatattgta 27681804  T
Q  280 aatcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgttgttttatcttg--caatatatggtatttcatgtata-----taattggt 372  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | |  |||||| |  ||| | || | ||     |||||  |    
T  27681805 aatcattgagttcctcaagtagaagaatgttaatgagtcaggttagttgttgttttatatagcacaatattttatatataatatttaatttgtaattcat 27681904  T
Q  373 agtgtaattattattatgttgtataaactaacagaaactacacaaggctggatgca 428  Q
    ||||||||||||||||| |||||||||| |||||||||||||  |||| |||||||    
T  27681905 agtgtaattattattattttgtataaacaaacagaaactacatgaggcgggatgca 27681960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 67 - 337
Target Start/End: Complemental strand, 27608648 - 27608378
Alignment:
Q  67 attgcaacctatttgatgaaagtctcctaataattctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccga 166  Q
    |||||||||| |  |||||| |||||| |||| ||||||| |||| ||||||| ||| |  ||||| |||| || | | |||||||||||||||||| ||    
T  27608648 attgcaacctctcagatgaatgtctcccaatacttctcaagtggtttgttaatgtgacatgtctagacttatcatatagcaatttcaaaattcttcctga 27608549  T
Q  167 gttccttagtgaatgtcaccatcttgttgaaattatcgtggacggctgtacctctcttgaggaaattagggggattccaccaaatcttaaatggctttct 266  Q
    || |||||||||||||||||||||||||  |||||  |||   | |||    || |||||||||||||| ||||||||||||||||||||||||||||||    
T  27608548 gtgccttagtgaatgtcaccatcttgttctaattactgtgagggactgcgagtcccttgaggaaattagagggattccaccaaatcttaaatggctttct 27608449  T
Q  267 gcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgttgttttat 337  Q
    |||     |||  ||||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||||    
T  27608448 gcaagcgaatgcaaatcattgagttcctcaagtaaaagaaagttaatgagtcaggttagttgttgttttat 27608378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 81 - 348
Target Start/End: Original strand, 28795058 - 28795322
Alignment:
Q  81 gatgaaagtctcctaataattctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaat 180  Q
    |||||| |||||| |||| ||||||| |||||||||||| |||||   |||| |||| ||  ||||||||||||| || |||| |||| |||||||||||    
T  28795058 gatgaatgtctcccaatatttctcaagtggtgtgttaatgtgaaattgctagacttatcatggaacaatttcaaatttattcctgagtgccttagtgaat 28795157  T
Q  181 gtcaccatcttgttgaaattatcgtggacggctgtacctctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtga 280  Q
    || ||| ||||  | |  |||   ||||   ||| |  ||||| ||||||||||| |||||||||||||||||| || ||||||||||| || ||||  |    
T  28795158 gttaccttcttaataaccttagattggataactgcaagtctctcgaggaaattagagggattccaccaaatcttgaaaggctttctgcaatgggatgcaa 28795257  T
Q  281 atcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgttgttttatcttgcaatata 348  Q
    |||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||||    
T  28795258 atcattgagttcctcaagtagaagaatgctattgagtcaggt---ttgttgttttatcttgcaatata 28795322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 28788972 - 28789305
Alignment:
Q  19 aaatttattctgtagtgttttcaaatgtggatcatcttgttctcgaaaattgcaacctatttgatgaaagtctcctaataattctcaaatggtgtgttaa 118  Q
    |||| |||||| ||||||||||||| |||    ||||||||||| | |||||||| || |  |||||| |||||| |||| ||||||| ||||||||| |    
T  28788972 aaatgtattctatagtgttttcaaaagtgacaaatcttgttctcaataattgcaagctctcagatgaatgtctcccaatatttctcaagtggtgtgttta 28789071  T
Q  119 tctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaatgtcaccatcttgttgaaattatcgtggacggctgtacc 218  Q
    | ||| | |||||| |||| ||  ||||||||||||| || |||| |||| ||||||||||||| ||| ||||  |    |||   ||||   ||| |      
T  28789072 tgtgacatatctagacttatcatggaacaatttcaaacttattcctgagtgccttagtgaatgttaccttctttctagccttagattggataactgcaag 28789171  T
Q  219 tctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtc 318  Q
    ||||| ||||||||||| ||||||||||||||||||  | ||||||||||| |  ||||  |||||||||||||||||||||||| |||| |||||||||    
T  28789172 tctctggaggaaattagagggattccaccaaatcttgcaaggctttctgcaatcggatgcaaatcattgagttcctcaagtagaaaaatgctattgagtc 28789271  T
Q  319 aggttcgttgttgttttatcttgcaatatatggtatt 355  Q
    ||||   |||||||||||||||||||||||| |||||    
T  28789272 aggt---ttgttgttttatcttgcaatatatagtatt 28789305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 108 - 337
Target Start/End: Complemental strand, 27602210 - 27601980
Alignment:
Q  108 tggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaatgtcaccatcttgttgaaattatcgtgg 207  Q
    |||||||||||| || |||||||||||||| |  ||| |||||||||||||||||| |||| ||||||||||||||||| ||||    | |||   ||||    
T  27602210 tggtgtgttaatgtggaaaatctagtcttatctgagagcaatttcaaaattcttcctgagtgccttagtgaatgtcaccttcttaaaaacatttatgtgg 27602111  T
Q  208 acggctgtacctctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaat 307  Q
    | ||||| |  | ||||||||||||||| ||| |||||||||||||||||    ||  ||||  |   ||||||||||||||||||||||||||||||||    
T  27602110 atggctgcaagtttcttgaggaaattagagggtttccaccaaatcttaaaatatttcatgcaaaggactgtgaatcattgagttcctcaagtagaagaat 27602011  T
Q  308 gttattgagtcaggttcg-ttgttgttttat 337  Q
    |||||||||||||||| | ||||||||||||    
T  27602010 gttattgagtcaggtttgtttgttgttttat 27601980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 67 - 337
Target Start/End: Complemental strand, 27716028 - 27715758
Alignment:
Q  67 attgcaacctatttgatgaaagtctcctaataattctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccga 166  Q
    |||||||||| |  |||||| |||||| || | ||||||| |||||||||||| ||| |  ||||  ||||  | | | |||||||||||||||||| ||    
T  27716028 attgcaacctctcagatgaatgtctccgaagagttctcaagtggtgtgttaatatgacatctctaaacttattatatagcaatttcaaaattcttcctga 27715929  T
Q  167 gttccttagtgaatgtcaccatcttgttgaaattatcgtggacggctgtacctctcttgaggaaattagggggattccaccaaatcttaaatggctttct 266  Q
    || ||||||||||||||||||||||||||||||||  ||||    |||    || |||||||||||||| ||||||||||||||||| |||  | ||  |    
T  27715928 gtgccttagtgaatgtcaccatcttgttgaaattaatgtggggtactgcgagtcccttgaggaaattagagggattccaccaaatctaaaagagattaat 27715829  T
Q  267 gcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgttgttttat 337  Q
    |||    ||||| ||||||||||||||||||||| |||||| ||| ||||||||||| |||||||||||||    
T  27715828 gcacaaggatgtcaatcattgagttcctcaagtaaaagaatattaatgagtcaggttagttgttgttttat 27715758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 100 - 346
Target Start/End: Original strand, 26886777 - 26887023
Alignment:
Q  100 ttctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaatgtcaccatcttgttgaaat 199  Q
    ||||||| |||| ||||||| ||||| |||||| |||| |||||||||||||||||||||||||||||| |||||  |||||||||| ||||     | |    
T  26886777 ttctcaagtggtttgttaatgtgaaacatctagacttatcaaagaacaatttcaaaattcttcccgagtgccttaaggaatgtcaccttcttaggatact 26886876  T
Q  200 tatcgtggacggctgtacctctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagt 299  Q
    |    || |    || |  ||||||||||||||||| ||||| |||||||||||||||   ||||||||  | | |||  | ||||||||||||||||||    
T  26886877 tgaattgaatcattgcaagtctcttgaggaaattagagggataccaccaaatcttaaagacctttctgctataaaatgccattcattgagttcctcaagt 26886976  T
Q  300 agaagaatgttattgagtcaggttcgttgttgttttatcttgcaata 346  Q
    |||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  26886977 agaagaatgttattgagtcaggtttgtttttgttctatcttgcaata 26887023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 81 - 348
Target Start/End: Complemental strand, 27696105 - 27695838
Alignment:
Q  81 gatgaaagtctcctaataattctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaat 180  Q
    |||||| |||||| |||| ||||||| |||||||||||| ||| | ||||||  ||| || | | | |||||||||||||||| |||| ||||||||||     
T  27696105 gatgaatgtctcccaatacttctcaagtggtgtgttaatatgacatatctagatttatcatatagcgatttcaaaattcttccagagtgccttagtgaaa 27696006  T
Q  181 gtcaccatcttgttgaaattatcgtggacggctgtacctctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcat-tgagatgtg 279  Q
    ||||||||||||| |||||||| |||     ||| |  || |||||||||||||| ||||||||||||||||||  | | || | ||| | ||| |||      
T  27696005 gtcaccatcttgtggaaattattgtgaggtactgcaagtcccttgaggaaattagagggattccaccaaatcttggaagtctctatgcttatga-atgca 27695907  T
Q  280 aatcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgttgttttatcttgcaatata 348  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||| ||||||||||| | ||||| ||||    
T  27695906 aatcattgagttcatcatgtagaagaatgttaatgagtcaggtttgttgttgttttttattgcactata 27695838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 89 - 335
Target Start/End: Complemental strand, 27675080 - 27674834
Alignment:
Q  89 tctcctaataattctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaatgtcaccat 188  Q
    ||||| |||| |||| || |||||||||||| || ||   |||| |||| || | |||||||||||||||||||| |||| |||||||||||||||||||    
T  27675080 tctccaaatagttcttaagtggtgtgttaatgtggaattgctagacttatcacataacaatttcaaaattcttcctgagtgccttagtgaatgtcaccat 27674981  T
Q  189 cttgttgaaattatcgtggacggctgtacctctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattga 288  Q
    |||    |  ||    || |   |||  | ||||||||||||||||| |||||||||||||||||||||  |||||| ||||    |||| |||||||||    
T  27674980 cttaagcatcttggtttgcattactgctcttctcttgaggaaattagagggattccaccaaatcttaaagagctttccgcatatcaatgtaaatcattga 27674881  T
Q  289 gttcctcaagtagaagaatgttattgagtcaggttcgttgttgtttt 335  Q
    |||||||| |||||||||||||| ||||||||||| |||||||||||    
T  27674880 gttcctcatgtagaagaatgttaatgagtcaggttagttgttgtttt 27674834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 219 - 348
Target Start/End: Original strand, 26805288 - 26805417
Alignment:
Q  219 tctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtc 318  Q
    ||||||||||||||||| ||||||||||| ||||| |||  ||||||||||    ||||| ||||||||||||| |||||||||||||||||| ||||||    
T  26805288 tctcttgaggaaattagagggattccaccgaatctaaaagagctttctgcagaaggatgtaaatcattgagttcatcaagtagaagaatgttaatgagtc 26805387  T
Q  319 aggttcgttgttgttttatcttgcaatata 348  Q
    ||||| ||||||||||| | ||||| ||||    
T  26805388 aggtttgttgttgttttttattgcactata 26805417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 146 - 343
Target Start/End: Original strand, 26851224 - 26851421
Alignment:
Q  146 caatttcaaaattcttcccgagttccttagtgaatgtcaccatcttgttgaaattatcgtggacggctgtacctctcttgaggaaattagggggattcca 245  Q
    |||||| |||||||||||||||| ||||||||||||||||| ||||   ||  || |  || | ||||| |  | ||||||||||||||| |||||||||    
T  26851224 caatttaaaaattcttcccgagtgccttagtgaatgtcaccgtcttagggagcttgtattgtatggctgcaattttcttgaggaaattagagggattcca 26851323  T
Q  246 ccaaatcttaaatggctttctgcattgagat-gtgaatcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgttgttttatcttgca 343  Q
    || ||||| || |  || |||||| | |||| |  ||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||    
T  26851324 ccgaatctaaattacctgtctgcaat-agattgcaaatcattgagttcctcaagcagaagaatgttattgagtcaggtttgttattgttttatcttgca 26851421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 219 - 346
Target Start/End: Original strand, 31287366 - 31287490
Alignment:
Q  219 tctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtc 318  Q
    ||||||||||||||||| |||||||||||||||||| ||  |||||| || |  | ||||||||| |||||||||||||||||||||||||||  |||||    
T  31287366 tctcttgaggaaattagagggattccaccaaatcttgaagagctttccgcttataaatgtgaatcgttgagttcctcaagtagaagaatgttaacgagtc 31287465  T
Q  319 aggttcgttgttgttttatcttgcaata 346  Q
    ||||   |||||||||| ||||||||||    
T  31287466 aggt---ttgttgttttttcttgcaata 31287490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 147 - 343
Target Start/End: Complemental strand, 27662820 - 27662624
Alignment:
Q  147 aatttcaaaattcttcccgagttccttagtgaatgtcaccatcttgttgaaattatcgtggacggctgtacctctcttgaggaaattagggggattccac 246  Q
    |||||||||||||||||| ||| |||||||||||||||| ||||||   |  ||    ||||   ||||   ||||||||||||||||| ||||||||||    
T  27662820 aatttcaaaattcttcccaagtgccttagtgaatgtcactatcttgagcatctttatttggattactgtgagtctcttgaggaaattagagggattccac 27662721  T
Q  247 caaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgttgttttatcttgca 343  Q
    | ||||| | |   |||| ||||    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||    
T  27662720 ccaatctaacaaatctttatgcagaaggatgtaaatcattgagttcctcaagtagaagaatgttattgagtcaggtttgtttttattttatcttgca 27662624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 365
Target Start/End: Complemental strand, 27590502 - 27590358
Alignment:
Q  219 tctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtc 318  Q
    ||||||||||||||||| |||||||||||||||||| ||  | ||  ||| |   ||||||||||||||||||| |||||||||||||||||| ||| ||    
T  27590502 tctcttgaggaaattagagggattccaccaaatcttgaagtggttgatgcttatggatgtgaatcattgagttcatcaagtagaagaatgttaatgaatc 27590403  T
Q  319 aggttcgttgttgttttatcttgcaatatatggtatttcatgtatat 365  Q
    ||||| ||||||||||| | ||||| ||||  ||||||||| |||||    
T  27590402 aggtttgttgttgttttttattgcactata--gtatttcatatatat 27590358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 191
Target Start/End: Original strand, 26658645 - 26658741
Alignment:
Q  95 aataattctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaatgtcaccatctt 191  Q
    |||| ||||||| |||||||||||| ||||| |||||  |||| |||||||||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  26658645 aatacttctcaagtggtgtgttaatgtgaaatatctaaacttatcaaagaacaatttcaaaattctacccgagtgccttagtgaatgtcaccttctt 26658741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 191
Target Start/End: Original strand, 26764616 - 26764712
Alignment:
Q  95 aataattctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaatgtcaccatctt 191  Q
    |||| ||||||| |||||||||||| ||||| |||||  |||| |||||||||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  26764616 aatacttctcaagtggtgtgttaatgtgaaatatctaaacttatcaaagaacaatttcaaaattctacccgagtgccttagtgaatgtcaccttctt 26764712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 220 - 337
Target Start/End: Original strand, 25513663 - 25513780
Alignment:
Q  220 ctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcatt-gagatgtgaatcattgagttcctcaagtagaagaatgttattgagtc 318  Q
    |||||||||||||||| |||||||||||||||||| || |||||| ||||   ||| ||| | ||||||||||||||||||| |||||||||| ||||||    
T  25513663 ctcttgaggaaattagagggattccaccaaatcttgaaaggctttttgcagacgag-tgttattcattgagttcctcaagtataagaatgttaatgagtc 25513761  T
Q  319 aggttcgttgttgttttat 337  Q
    ||||| |||||| ||||||    
T  25513762 aggtttgttgtttttttat 25513780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 220 - 337
Target Start/End: Original strand, 26145785 - 26145902
Alignment:
Q  220 ctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcatt-gagatgtgaatcattgagttcctcaagtagaagaatgttattgagtc 318  Q
    |||||||||||||||| |||||||||||||||||| || |||||| ||||   ||| ||| | ||||||||||||||||||| |||||||||| ||||||    
T  26145785 ctcttgaggaaattagagggattccaccaaatcttgaaaggctttgtgcagacgag-tgttattcattgagttcctcaagtataagaatgttaatgagtc 26145883  T
Q  319 aggttcgttgttgttttat 337  Q
    ||||| |||||| ||||||    
T  26145884 aggtttgttgtttttttat 26145902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 221 - 337
Target Start/End: Original strand, 25547769 - 25547885
Alignment:
Q  221 tcttgaggaaattagggggattccaccaaatcttaaatggctttctgcatt-gagatgtgaatcattgagttcctcaagtagaagaatgttattgagtca 319  Q
    ||||||||||||||| |||||||||||||||||| || |||||| ||||   ||| ||| | ||||||||||||||||||| |||||||||| |||||||    
T  25547769 tcttgaggaaattagagggattccaccaaatcttgaaaggctttttgcagacgag-tgttattcattgagttcctcaagtataagaatgttaatgagtca 25547867  T
Q  320 ggttcgttgttgttttat 337  Q
    |||| |||||| ||||||    
T  25547868 ggtttgttgtttttttat 25547885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 219 - 346
Target Start/End: Original strand, 26625919 - 26626046
Alignment:
Q  219 tctcttgaggaaattagggggattccaccaaatcttaaatggctt-tctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagt 317  Q
    ||||||||||||||||| ||||||||||||||||| ||||  ||| ||||||  |  |||   ||||||||||||||||| ||||||||||||||| |||    
T  26625919 tctcttgaggaaattagagggattccaccaaatct-aaattacttgtctgcaacggaatgcttatcattgagttcctcaactagaagaatgttattaagt 26626017  T
Q  318 caggttcgttgttgttttatcttgcaata 346  Q
    |||||| ||||| ||||| ||||||||||    
T  26626018 caggtttgttgtggttttttcttgcaata 26626046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 219 - 346
Target Start/End: Original strand, 26731896 - 26732023
Alignment:
Q  219 tctcttgaggaaattagggggattccaccaaatcttaaatggctt-tctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagt 317  Q
    ||||||||||||||||| ||||||||||||||||| ||||  ||| ||||||  |  |||   ||||||||||||||||| ||||||||||||||| |||    
T  26731896 tctcttgaggaaattagagggattccaccaaatct-aaattacttgtctgcaacggaatgcttatcattgagttcctcaactagaagaatgttattaagt 26731994  T
Q  318 caggttcgttgttgttttatcttgcaata 346  Q
    |||||| ||||| ||||| ||||||||||    
T  26731995 caggtttgttgtggttttttcttgcaata 26732023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 356
Target Start/End: Original strand, 26980121 - 26980333
Alignment:
Q  144 aacaatttcaaaattcttcccgagttccttagtgaatgtcaccatcttgttgaaattatcgtggacggctgtacctctcttgaggaaattagggggattc 243  Q
    ||||||||||||||||| || |||| ||||| ||||||||||||||||    |  || |  |||| ||||| |  | ||||||||||||||| ||| |||    
T  26980121 aacaatttcaaaattctacctgagtgccttaatgaatgtcaccatcttcggcagcttgtattggatggctgcaagtttcttgaggaaattagagggtttc 26980220  T
Q  244 caccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgttgttttatcttgca 343  Q
    |||||||||||||   | |||| ||| | | ||||| |||||| ||||    | ||||||||| | |||||||||||||| ||||||||||||| |||||    
T  26980221 caccaaatcttaatgagatttcggcaatcaaatgtgtatcattaagtttggaatgtagaagaaggctattgagtcaggtttgttgttgttttattttgca 26980320  T
Q  344 atatatggtattt 356  Q
    |||||| ||||||    
T  26980321 atatatagtattt 26980333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 264 - 330
Target Start/End: Complemental strand, 25491472 - 25491406
Alignment:
Q  264 tctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgtt 330  Q
    |||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25491472 tctgcaatgagatgcaaatcattgagttcctcaagtagaagaatgttattgagtcaggtttgttgtt 25491406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 220 - 333
Target Start/End: Original strand, 26638190 - 26638303
Alignment:
Q  220 ctcttgaggaaattagggggattccaccaaatcttaaatggctt-tctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtc 318  Q
    ||||||| |||||||| ||||||||||||||||| ||||  ||| |||||| ||  ||| || ||||||||||||||||||||||||| | |||||||||    
T  26638190 ctcttgaagaaattagagggattccaccaaatct-aaattacttgtctgcaatggaatgcgattcattgagttcctcaagtagaagaaggctattgagtc 26638288  T
Q  319 aggttcgttgttgtt 333  Q
    ||||| |||||||||    
T  26638289 aggtttgttgttgtt 26638303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 220 - 333
Target Start/End: Original strand, 26744156 - 26744269
Alignment:
Q  220 ctcttgaggaaattagggggattccaccaaatcttaaatggctt-tctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtc 318  Q
    ||||||| |||||||| ||||||||||||||||| ||||  ||| |||||| ||  ||| || ||||||||||||||||||||||||| | |||||||||    
T  26744156 ctcttgaagaaattagagggattccaccaaatct-aaattacttgtctgcaatggaatgcgattcattgagttcctcaagtagaagaaggctattgagtc 26744254  T
Q  319 aggttcgttgttgtt 333  Q
    ||||| |||||||||    
T  26744255 aggtttgttgttgtt 26744269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 337
Target Start/End: Original strand, 25582495 - 25582612
Alignment:
Q  220 ctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtca 319  Q
    |||||| ||||||||| |||||||||||||||||| ||   |||| |||| | |  ||| | ||||||||||||||||||| |||||||||| |||||||    
T  25582495 ctcttgtggaaattagagggattccaccaaatcttgaaattctttttgcagtcatttgttattcattgagttcctcaagtataagaatgttaatgagtca 25582594  T
Q  320 ggttcgttgttgttttat 337  Q
    |||| |||||| ||||||    
T  25582595 ggtttgttgtttttttat 25582612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 337
Target Start/End: Original strand, 26058707 - 26058824
Alignment:
Q  220 ctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtca 319  Q
    |||||| ||||||||| |||||||||||||||||| ||   |||| |||| | |  ||| | ||||||||||||||||||| |||||||||| |||||||    
T  26058707 ctcttgtggaaattagagggattccaccaaatcttgaaattctttttgcagtcatttgttattcattgagttcctcaagtataagaatgttaatgagtca 26058806  T
Q  320 ggttcgttgttgttttat 337  Q
    |||| |||||| ||||||    
T  26058807 ggtttgttgtttttttat 26058824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 337
Target Start/End: Original strand, 26078677 - 26078794
Alignment:
Q  220 ctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtca 319  Q
    |||||| ||||||||| |||||||||||||||||| ||   |||| |||| | |  ||| | ||||||||||||||||||| |||||||||| |||||||    
T  26078677 ctcttgtggaaattagagggattccaccaaatcttgaaattctttttgcagtcatttgttattcattgagttcctcaagtataagaatgttaatgagtca 26078776  T
Q  320 ggttcgttgttgttttat 337  Q
    |||| |||||| ||||||    
T  26078777 ggtttgttgtttttttat 26078794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 221 - 343
Target Start/End: Original strand, 26876363 - 26876482
Alignment:
Q  221 tcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtcag 320  Q
    ||||||||||||||| ||||||||||||||| |  || |||||||||||  |  ||| |||||||||| | | |||||||||||||||||||| || |||    
T  26876363 tcttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacag 26876462  T
Q  321 gttcgttgttgttttatcttgca 343  Q
    ||   ||||||||||||||||||    
T  26876463 gt---ttgttgttttatcttgca 26876482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 220 - 330
Target Start/End: Original strand, 25485778 - 25485888
Alignment:
Q  220 ctcttgaggaaattagggggattccaccaaatcttaaatggctttctgc-attgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtc 318  Q
    |||||||||||||||| |||||||||||||||||| || |||||| ||| |  ||| ||| | ||||||| ||||||||||| |||||||||| ||||||    
T  25485778 ctcttgaggaaattagagggattccaccaaatcttgaaaggctttttgcaaacgag-tgttattcattgaattcctcaagtataagaatgttaatgagtc 25485876  T
Q  319 aggttcgttgtt 330  Q
    ||||| ||||||    
T  25485877 aggtttgttgtt 25485888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 191
Target Start/End: Original strand, 25485589 - 25485749
Alignment:
Q  31 tagtgttttcaaatgtggatcatcttgttctcgaaaattgcaacctatttgatgaaagtctcctaataattctcaaatggtgtgttaatctgaaaaatct 130  Q
    ||||||||||||||||||| ||| |||  |||  |||   |||||| |  |||||| |||||| |||| ||||||| |||| ||||||| ||| |  |||    
T  25485589 tagtgttttcaaatgtggaacatgttgagctcagaaacaacaacctctcagatgaatgtctcccaatacttctcaagtggtttgttaatgtgacatttct 25485688  T
Q  131 agtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaatgtcaccatctt 191  Q
    || |||| |  |||||||||||| |||||||||||||| |||| |||||||||||| ||||    
T  25485689 agacttatcgcagaacaatttcacaattcttcccgagtgccttggtgaatgtcaccgtctt 25485749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 191
Target Start/End: Original strand, 25076542 - 25076652
Alignment:
Q  81 gatgaaagtctcctaataattctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaat 180  Q
    |||||| |||| | |||| ||||||| |||| ||||||| ||||| |||||| |||  | || ||  ||||||||||||||||||||| |||||||||||    
T  25076542 gatgaatgtcttccaatacttctcaagtggtttgttaatgtgaaatatctagacttgtctaacaatgatttcaaaattcttcccgagtgccttagtgaat 25076641  T
Q  181 gtcaccatctt 191  Q
    ||| |||||||    
T  25076642 gtcgccatctt 25076652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 488
Target Start/End: Original strand, 26887758 - 26887852
Alignment:
Q  391 ttgtataaactaacagaaactacacaaggctggatgcattgaggagattcttatgccaaacggaatagaggggattccagattggttcgaacaccaaa 488  Q
    |||||||||||||||||||||| |  ||||||||||||  |||    ||||| | |||||||||| ||||||||||||||||||||| || |||||||    
T  26887758 ttgtataaactaacagaaactatatgaggctggatgcacagagt---ttcttttcccaaacggaagagaggggattccagattggtttgagcaccaaa 26887852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 81 - 191
Target Start/End: Original strand, 25513524 - 25513634
Alignment:
Q  81 gatgaaagtctcctaataattctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaat 180  Q
    |||||| |||||| |||| ||||||| |||| ||||||| ||| |  ||||| |||| |  |||||||||||| |||||||||||||| |||| ||||||    
T  25513524 gatgaatgtctcccaatacttctcaagtggtttgttaatgtgacatttctagacttatcggagaacaatttcacaattcttcccgagtgccttggtgaat 25513623  T
Q  181 gtcaccatctt 191  Q
     ||||| ||||    
T  25513624 atcaccgtctt 25513634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 81 - 191
Target Start/End: Original strand, 26145646 - 26145756
Alignment:
Q  81 gatgaaagtctcctaataattctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaat 180  Q
    |||||| |||||| |||| ||||||| |||| ||||||| ||| |  ||||| |||| |  ||||| |||||| |||||||||||||| |||| ||||||    
T  26145646 gatgaatgtctcccaatacttctcaagtggtttgttaatgtgacatttctagacttatcggagaactatttcacaattcttcccgagtgccttggtgaat 26145745  T
Q  181 gtcaccatctt 191  Q
    |||||| ||||    
T  26145746 gtcaccgtctt 26145756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 26805159 - 26805260
Alignment:
Q  90 ctcctaataattctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaatgtcaccatc 189  Q
    |||| |||| |||| || |||||||||||| |  || | ||||  ||| |||| |||||||||||||||||||| ||||  |||||||||||||||||||    
T  26805159 ctccaaatagttcttaagtggtgtgttaatgttgaagaactagagttatcaaacaacaatttcaaaattcttcctgagtgtcttagtgaatgtcaccatc 26805258  T
Q  190 tt 191  Q
    ||    
T  26805259 tt 26805260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 27658055 - 27657987
Alignment:
Q  281 atcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgttgttttatcttgcaatatat 349  Q
    |||| |||||| ||||| ||||||||||||||| ||||||||| ||||||||||| | ||||| |||||    
T  27658055 atcactgagtttctcaactagaagaatgttatttagtcaggtttgttgttgttttgtgttgcagtatat 27657987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 191
Target Start/End: Original strand, 25547576 - 25547739
Alignment:
Q  31 tagtgttttcaaatgtggatcatcttgttctcgaaaattgcaacctatttgatgaaagtctcctaataattctcaaatggtgtgttaatctgaaaaatct 130  Q
    ||||||||||||||||||| ||| |||  |||  |||   |||||| |  |||||| |||||| |||| ||||||| |||| ||||||| ||| |  |||    
T  25547576 tagtgttttcaaatgtggaacatgttgacctcagaaacaacaacctctcagatgaatgtctcccaatacttctcaagtggtttgttaatgtgacatttct 25547675  T
Q  131 agtcttagcaaagaac---aatttcaaaattcttcccgagttccttagtgaatgtcaccatctt 191  Q
    || |||| |  |||||   ||||||| ||||||||| |||| |||||| |||||||||||||||    
T  25547676 agacttatcggagaacgataatttcacaattcttcctgagtgccttagcgaatgtcaccatctt 25547739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 428
Target Start/End: Complemental strand, 27608319 - 27608270
Alignment:
Q  379 attattattatgttgtataaactaacagaaactacacaaggctggatgca 428  Q
    ||||||||||| |||||||||| |||||||||||||  ||||||||||||    
T  27608319 attattattattttgtataaacaaacagaaactacatgaggctggatgca 27608270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 31287162 - 31287333
Alignment:
Q  18 aaaatttattctgtagtgttttcaaatgtggatcatcttgttctcgaaaattgcaacctatttgatgaaagtctcctaataattctcaaatggtgtgtta 117  Q
    |||||| ||||| |||||||||||||||||   || |||  |||| ||||||||||||| |  |||||| || | | |||| ||||||| |||| |||||    
T  31287162 aaaattaattctatagtgttttcaaatgtgacacagcttagtctccaaaattgcaacctctcagatgaatgtttaccaatacttctcaagtggtttgtta 31287261  T
Q  118 atctgaaaaatctagtcttagcaaagaa---caatttcaaaattcttcccgagttccttagtgaatgtcacc 186  Q
    || ||||||  |||| |||| |  | ||   ||||||||| |||||||||||||  |||| |||||||||||    
T  31287262 atgtgaaaaggctagacttatcgcataacttcaatttcaatattcttcccgagtgtcttaatgaatgtcacc 31287333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 31287510 - 31287583
Alignment:
Q  352 tatttcatgtatataattggtagtgtaattattatt-atgttgtataaactaacagaaactacacaaggctgga 424  Q
    ||||||||||||||||||  |||||||||||| |||  | || |||||||||||||||||||||  ||||||||    
T  31287510 tatttcatgtatataattcatagtgtaattatcattctttttttataaactaacagaaactacatgaggctgga 31287583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 31290316 - 31290353
Alignment:
Q  312 ttgagtcaggttcgttgttgttttatcttgcaatatat 349  Q
    |||||||||||| |||||||||||||||||||||||||    
T  31290316 ttgagtcaggttagttgttgttttatcttgcaatatat 31290353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 330
Target Start/End: Original strand, 25076743 - 25076791
Alignment:
Q  282 tcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgtt 330  Q
    ||||||| |||| |||||||||||||||||||| |||||||| ||||||    
T  25076743 tcattgaattccacaagtagaagaatgttattgggtcaggtttgttgtt 25076791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 26638114 - 26638161
Alignment:
Q  144 aacaatttcaaaattcttcccgagttccttagtgaatgtcaccatctt 191  Q
    |||||||||||||||||||| |||| |||||||| |||||||| ||||    
T  26638114 aacaatttcaaaattcttcctgagtgccttagtgtatgtcaccttctt 26638161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 26744080 - 26744127
Alignment:
Q  144 aacaatttcaaaattcttcccgagttccttagtgaatgtcaccatctt 191  Q
    |||||||||||||||||||| |||| |||||||| |||||||| ||||    
T  26744080 aacaatttcaaaattcttcctgagtgccttagtgtatgtcaccttctt 26744127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 488
Target Start/End: Original strand, 26876569 - 26876620
Alignment:
Q  437 attcttatgccaaacggaatagaggggattccagattggttcgaacaccaaa 488  Q
    |||||| | |||||||||| ||||||||||||||| |||||| |||||||||    
T  26876569 attcttctcccaaacggaacagaggggattccagactggttccaacaccaaa 26876620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 26826731 - 26826780
Alignment:
Q  274 gatgtgaatcattgagttcctcaagtagaagaatgttattgagtcaggtt 323  Q
    ||||||||||||||||||  ||||||| ||||||| ||||||| ||||||    
T  26826731 gatgtgaatcattgagtttatcaagtataagaatgctattgagccaggtt 26826780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 428
Target Start/End: Complemental strand, 27715716 - 27715657
Alignment:
Q  372 tagtgtaattattattatg---ttgtataaactaacagaaactacacaaggctggatgca 428  Q
    ||||||||||||||||||    |||||||||| |||||||||||||  ||||||||||||    
T  27715716 tagtgtaattattattattattttgtataaacaaacagaaactacatcaggctggatgca 27715657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 25582420 - 25582460
Alignment:
Q  145 acaatttcaaaattcttcccgagttccttagtgaatgtcac 185  Q
    ||||||||| |||||||||||||| |||| |||||||||||    
T  25582420 acaatttcacaattcttcccgagtgccttggtgaatgtcac 25582460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 26058632 - 26058672
Alignment:
Q  145 acaatttcaaaattcttcccgagttccttagtgaatgtcac 185  Q
    ||||||||| |||||||||||||| |||| |||||||||||    
T  26058632 acaatttcacaattcttcccgagtgccttggtgaatgtcac 26058672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 26078602 - 26078642
Alignment:
Q  145 acaatttcaaaattcttcccgagttccttagtgaatgtcac 185  Q
    ||||||||| |||||||||||||| |||| |||||||||||    
T  26078602 acaatttcacaattcttcccgagtgccttggtgaatgtcac 26078642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 488
Target Start/End: Original strand, 26808479 - 26808523
Alignment:
Q  444 tgccaaacggaatagaggggattccagattggttcgaacaccaaa 488  Q
    |||||||  ||| |||||||||||||||||||||||| |||||||    
T  26808479 tgccaaaaagaacagaggggattccagattggttcgagcaccaaa 26808523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 196
Target Start/End: Original strand, 26826557 - 26826653
Alignment:
Q  100 ttctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaatgtcaccatcttgttga 196  Q
    ||||||| |||||||||||| ||| |  ||||| |||| ||  |||||| ||||||||| |||| |||| ||||||||||  ||||| | |||||||    
T  26826557 ttctcaagtggtgtgttaatgtgacatctctagacttatcagggaacaaattcaaaattattcctgagtgccttagtgaacttcaccttattgttga 26826653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 488
Target Start/End: Original strand, 26851544 - 26851588
Alignment:
Q  444 tgccaaacggaatagaggggattccagattggttcgaacaccaaa 488  Q
    |||||| ||||| ||| |||||||||||||||||||| |||||||    
T  26851544 tgccaagcggaacagaagggattccagattggttcgagcaccaaa 26851588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 480
Target Start/End: Complemental strand, 27662519 - 27662483
Alignment:
Q  444 tgccaaacggaatagaggggattccagattggttcga 480  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  27662519 tgccaaccggaacagaggggattccagattggttcga 27662483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 10122 - 10448
Alignment:
Q  19 aaatttattctgtagtgttttcaaatgtggatcatcttgttctcgaaaattgcaacctatttgatgaaagtctcctaataattctcaaatggtgtgttaa 118  Q
    |||| |||||| ||||||||||||| |||    ||||||||||| | |||||||| || |  |||||| |||||| |||| ||||||| |||||||||||    
T  10122 aaatgtattctatagtgttttcaaaagtgacaaatcttgttctcaataattgcaagctctcagatgaatgtctcccaatatttctcaagtggtgtgttaa 10221  T
Q  119 tctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaatgtcaccatcttgttgaaattatcgtggacggctgtacc 218  Q
    | |||||   |||| |||| ||| ||||||||||||| || |||| |||| ||||||||||||||||| ||||  | |  ||||  ||||   ||| |      
T  10222 tgtgaaattgctagacttatcaaggaacaatttcaaacttattcctgagtgccttagtgaatgtcaccttcttaataaccttatattggataactgcaag 10321  T
Q  219 tctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtc 318  Q
    ||||| ||||||||||| |||||| ||||||||||| || ||||||||||| || ||||  ||||||||||||||||||||||||||||| |||||||||    
T  10322 tctctggaggaaattagagggattgcaccaaatcttgaaaggctttctgcaatgggatgcaaatcattgagttcctcaagtagaagaatgctattgagtc 10421  T
Q  319 aggttcgttgttgttttatcttgcaatata 348  Q
    ||||   |||||||||||||||||||||||    
T  10422 aggt---ttgttgttttatcttgcaatata 10448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 2264 - 1931
Alignment:
Q  19 aaatttattctgtagtgttttcaaatgtggatcatcttgttctcgaaaattgcaacctatttgatgaaagtctcctaataattctcaaatggtgtgttaa 118  Q
    |||| |||||| ||||||||||||| |||    ||||| ||||| |  ||||||| || |  |||||| |||||| |||| ||||||| |||||||||||    
T  2264 aaatgtattctatagtgttttcaaaagtgacaaatcttattctccatgattgcaagctctcagatgaatgtctcccaatatttctcaagtggtgtgttaa 2165  T
Q  119 tctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaatgtcaccatcttgttgaaattatcgtggacggctgtacc 218  Q
    | ||| |  ||||| |||| || | |||||||||||| || |||| |||| ||||||||||||||||| ||||  |    ||||  ||||   ||| |      
T  2164 tgtgacatctctagacttatcatataacaatttcaaacttattcctgagtgccttagtgaatgtcaccttcttaatatccttatattggataactgcaag 2065  T
Q  219 tctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtc 318  Q
    ||||| ||||||||||| |||||||||||||||||| ||  |||||||||| || ||||  ||||||||||||| ||||||||||||||| |||||||||    
T  2064 tctctggaggaaattagagggattccaccaaatcttgaaatgctttctgcaatgggatgcaaatcattgagttcttcaagtagaagaatgctattgagtc 1965  T
Q  319 aggttcgttgttgttttatcttgcaatatatggtatt 355  Q
    ||||   |||||||||||||||||||||||| |||||    
T  1964 aggt---ttgttgttttatcttgcaatatatagtatt 1931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 81 - 355
Target Start/End: Complemental strand, 11165 - 10894
Alignment:
Q  81 gatgaaagtctcctaataattctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaat 180  Q
    |||||| |||||| |||| ||||||| ||||||||| || ||| | |||||| |||| ||  ||||||||||||| || |||| |||| |||||||||||    
T  11165 gatgaatgtctcccaatatttctcaagtggtgtgtttatgtgacatatctagacttatcatggaacaatttcaaacttattcctgagtgccttagtgaat 11066  T
Q  181 gtcaccatcttgttgaaattatcgtggacggctgtacctctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtga 280  Q
    || ||| ||||  |    |||   ||||   ||| |  ||||| ||||||||||| ||||||||||||||||||  | ||||||||||| |  ||||  |    
T  11065 gttaccttctttctagccttagattggataactgcaagtctctggaggaaattagagggattccaccaaatcttgcaaggctttctgcaatcggatgcaa 10966  T
Q  281 atcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgttgttttatcttgcaatatatggtatt 355  Q
    ||||||||||||||||||||||| |||| |||||||||||||   |||||||||||||||||||||||| |||||    
T  10965 atcattgagttcctcaagtagaaaaatgctattgagtcaggt---ttgttgttttatcttgcaatatatagtatt 10894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 81 - 335
Target Start/End: Complemental strand, 265845 - 265591
Alignment:
Q  81 gatgaaagtctcctaataattctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaat 180  Q
    |||||| |||||| |||| ||||||| |||||||||||| ||| | |||||  ||||   |||| ||| ||||||| |||||| |||| |||||||||||    
T  265845 gatgaatgtctcccaatacttctcaagtggtgtgttaatgtgatatatctaaacttaatgaagagcaagttcaaaactcttcctgagtgccttagtgaat 265746  T
Q  181 gtcaccatcttgttgaaattatcgtggacggctgtacctctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcat-tgagatgtg 279  Q
    |||||||||||||| |||||| ||||     ||| |  | ||||||||||||||| |||||||||||||||||||||  ||||| ||| | ||| |||      
T  265745 gtcaccatcttgttaaaattaacgtgagttactgcaagtatcttgaggaaattagagggattccaccaaatcttaaagagctttttgcgtatga-atgca 265647  T
Q  280 aatcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgttgtttt 335  Q
    | ||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  265646 actcattgagttcctcaagtaaaagaatgttattgagtcaggtttgttgttgtttt 265591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 219 - 330
Target Start/End: Complemental strand, 28125000 - 28124889
Alignment:
Q  219 tctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtc 318  Q
    ||||||||||||||||| |||||||||||||| || |||||| |||||||| || ||||||||||||| | ||||||| ||||||||||| ||||||| |    
T  28125000 tctcttgaggaaattagagggattccaccaaacctaaaatggttttctgcaatgcgatgtgaatcattaacttcctcatgtagaagaatgctattgagcc 28124901  T
Q  319 aggttcgttgtt 330  Q
    ||||| ||||||    
T  28124900 aggtttgttgtt 28124889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 330
Target Start/End: Complemental strand, 28130031 - 28129920
Alignment:
Q  219 tctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtc 318  Q
    ||||||||||||||||| ||| |||||||||| || ||| || |||||||| || ||||||||||||| | ||||||| ||||||||||| |||||||||    
T  28130031 tctcttgaggaaattagagggtttccaccaaacctaaaacggttttctgcaatgcgatgtgaatcattaacttcctcatgtagaagaatgctattgagtc 28129932  T
Q  319 aggttcgttgtt 330  Q
    ||||| ||||||    
T  28129931 aggtttgttgtt 28129920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 488
Target Start/End: Complemental strand, 28124819 - 28124731
Alignment:
Q  397 aaactaacagaaactacacaaggctggatgcattgaggagattcttatgccaaacggaatagaggggattccagattggttcgaacaccaaa 488  Q
    |||||||||||||||||   |||||||||||||||||   |||  | |||||| |||||  ||||||||||| ||||||||| |||||||||    
T  28124819 aaactaacagaaactacttgaggctggatgcattgag---atttgtttgccaaccggaactgaggggattcctgattggttccaacaccaaa 28124731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 488
Target Start/End: Complemental strand, 28129850 - 28129762
Alignment:
Q  397 aaactaacagaaactacacaaggctggatgcattgaggagattcttatgccaaacggaatagaggggattccagattggttcgaacaccaaa 488  Q
    |||||||||||||||||   |||||||||||||||||   |||  | |||||| |||||  ||||||||||| ||||| |||||||||||||    
T  28129850 aaactaacagaaactacttgaggctggatgcattgag---atttgtttgccaaccggaactgaggggattcctgattgtttcgaacaccaaa 28129762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 81 - 337
Target Start/End: Complemental strand, 29271353 - 29271097
Alignment:
Q  81 gatgaaagtctcctaataattctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagttccttagtgaat 180  Q
    |||||| |||||| |||| ||||||| |||||||||||| ||| | |||||| |||| ||   ||| |||||||||||||||| |||| |||||||||||    
T  29271353 gatgaatgtctcccaatacttctcaagtggtgtgttaatgtgacatatctagacttatcatttaactatttcaaaattcttcctgagtgccttagtgaat 29271254  T
Q  181 gtcaccatcttgttgaaattatcgtggacggctgtacctctcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgaga--tgt 278  Q
    ||| |||||||  | ||||||   ||   |||||    |||||| |||||||||| ||||||||||||||||| |||  ||||||||  ||||    |||    
T  29271253 gtctccatctttataaaattaatatgagtggctgccattctcttaaggaaattagagggattccaccaaatctaaaagagctttctg--ttgaatattgt 29271156  T
Q  279 gaatcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgttgttttat 337  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||    
T  29271155 gaatcattgagttcctcaagtaaaagaatgttaatgagtcaggttagttgttgttttat 29271097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 69 - 330
Target Start/End: Original strand, 22023913 - 22024174
Alignment:
Q  69 tgcaacctatttgatgaaagtctcctaataattctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagt 168  Q
    |||||||| ||||||||| | |||| |||| ||||||| || ||||||||| ||   |  |||| |||| | || |||||||||||||||||||||||||    
T  22023913 tgcaacctctttgatgaatgcctcccaatatttctcaagtgttgtgttaatatggttacgctagacttatcgaataacaatttcaaaattcttcccgagt 22024012  T
Q  169 tccttagtgaatgtcaccatcttgttgaaattatcgtggacggctgtacctctcttgaggaaattagggggattccaccaaatcttaaatggctttctgc 268  Q
     ||||| ||||||||||| | ||   |   |||   ||||  |||| |  ||| ||||||||||||| |||||||||||||||||| || ||||||||||    
T  22024013 gccttaatgaatgtcaccttgtttgggttcttaatttggatcgctgcaaatctgttgaggaaattagagggattccaccaaatcttgaaaggctttctgc 22024112  T
Q  269 attgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgtt 330  Q
    | |   |||  |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22024113 aatagaatgcaaatcattgagttcctcaagtagaagaatgttattgagtcaggtttgttgtt 22024174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 424
Target Start/End: Original strand, 22024204 - 22024270
Alignment:
Q  358 atgtatataattggtagtgtaattattattatgttgtataaactaacagaaactacacaaggctgga 424  Q
    ||||||||||||  |||||||||||||||| | ||||||||| ||||| ||||| ||  ||||||||    
T  22024204 atgtatataattcatagtgtaattattattttcttgtataaattaacaaaaacttcatgaggctgga 22024270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 67 - 337
Target Start/End: Original strand, 15917 - 16187
Alignment:
Q  67 attgcaacctatttgatgaaagtctcctaataattctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccga 166  Q
    |||||||||| |  |||||| |||||| || | ||||||| |||||||||||| ||| |  ||||  ||||  | | | |||||||||||||||||| ||    
T  15917 attgcaacctctcagatgaatgtctccgaagagttctcaagtggtgtgttaatatgacatctctaaacttattatatagcaatttcaaaattcttcctga 16016  T
Q  167 gttccttagtgaatgtcaccatcttgttgaaattatcgtggacggctgtacctctcttgaggaaattagggggattccaccaaatcttaaatggctttct 266  Q
    || ||||||||||||||||||||||||||||||||  ||||    |||    || |||||||||||||| ||||||||||||||||| |||  | ||  |    
T  16017 gtgccttagtgaatgtcaccatcttgttgaaattaatgtggggtactgcgagtcccttgaggaaattagagggattccaccaaatctaaaagagattaat 16116  T
Q  267 gcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgttgttttat 337  Q
    |||    ||||| ||||||||||||||||||||| |||||| ||| ||||||||||| |||||||||||||    
T  16117 gcacaaggatgtcaatcattgagttcctcaagtaaaagaatattaatgagtcaggttagttgttgttttat 16187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 16229 - 16288
Alignment:
Q  372 tagtgtaatta---ttattatgttgtataaactaacagaaactacacaaggctggatgca 428  Q
    |||||||||||   ||||||| |||||||||| |||||||||||||  ||||||||||||    
T  16229 tagtgtaattattattattattttgtataaacaaacagaaactacatcaggctggatgca 16288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 221 - 346
Target Start/End: Complemental strand, 18676979 - 18676854
Alignment:
Q  221 tcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtcag 320  Q
    ||||||||||||||| ||| ||||||| ||||| ||||   ||   ||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  18676979 tcttgaggaaattagagggtttccaccgaatctcaaatattttgaagcattaagatgtaaatcattgagttcctcaagtagaagaatgttattgagtcag 18676880  T
Q  321 gttcgttgttgttttatcttgcaata 346  Q
    ||| ||||||||||| ||||||||||    
T  18676879 gtttgttgttgttttttcttgcaata 18676854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 221 - 346
Target Start/End: Complemental strand, 18696822 - 18696697
Alignment:
Q  221 tcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtcag 320  Q
    ||||||||||||||| ||| ||||||| ||||| ||||  |||  |||||   ||||| |||||||||||||||||||||||||||||||||||||||||    
T  18696822 tcttgaggaaattagagggcttccaccgaatctcaaatatcttgatgcatatcgatgtaaatcattgagttcctcaagtagaagaatgttattgagtcag 18696723  T
Q  321 gttcgttgttgttttatcttgcaata 346  Q
    ||| ||||||||||| ||||||||||    
T  18696722 gtttgttgttgttttttcttgcaata 18696697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 221 - 346
Target Start/End: Complemental strand, 18687028 - 18686903
Alignment:
Q  221 tcttgaggaaattagggggattccaccaaatcttaaatggctttctgcat-tgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtca 319  Q
    ||||||||||||||| ||||||||||| ||||| ||||  |||  ||||| |||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  18687028 tcttgaggaaattagagggattccaccgaatctcaaatatcttgatgcatatgat-tgtaaatcattgagttcctcaagtagaagaatgttattgagtca 18686930  T
Q  320 ggttcgttgttgttttatcttgcaata 346  Q
    |||| ||||||||||| ||||||||||    
T  18686929 ggtttgttgttgttttttcttgcaata 18686903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 221 - 346
Target Start/End: Complemental strand, 18721493 - 18721368
Alignment:
Q  221 tcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtcag 320  Q
    ||||||||||||||| ||| ||||||| ||||| ||||  |||   |||||   |||| |||||||||||||||||||||||||||||||||||||||||    
T  18721493 tcttgaggaaattagagggtttccaccgaatctcaaatatcttgaagcattagaatgtaaatcattgagttcctcaagtagaagaatgttattgagtcag 18721394  T
Q  321 gttcgttgttgttttatcttgcaata 346  Q
    ||| ||||||||||| ||||||||||    
T  18721393 gtttgttgttgttttttcttgcaata 18721368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 275 - 346
Target Start/End: Complemental strand, 18652843 - 18652772
Alignment:
Q  275 atgtgaatcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgttgttttatcttgcaata 346  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  18652843 atgtaaatcattgagttcctcaagtagaagaatgttattgagtcaggtttgttgttgttttttcttgcaata 18652772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 346
Target Start/End: Complemental strand, 18728915 - 18728793
Alignment:
Q  221 tcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtcag 320  Q
    ||||||||||||||| ||| ||||||| ||||| ||||| |||  ||||||   |||| |||||||||||||||||| ||||||||||||||||||||||    
T  18728915 tcttgaggaaattagagggtttccaccgaatctcaaatgtcttgatgcatttgaatgtaaatcattgagttcctcaactagaagaatgttattgagtcag 18728816  T
Q  321 gttcgttgttgttttatcttgcaata 346  Q
    ||   |||||||||| ||||||||||    
T  18728815 gt---ttgttgttttttcttgcaata 18728793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 221 - 346
Target Start/End: Complemental strand, 18726412 - 18726288
Alignment:
Q  221 tcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtcag 320  Q
    ||||||||||||||| ||| ||||||| ||||| ||||| |||  ||||||  ||||| |||||||||||||||||| |||||| || || |||||||||    
T  18726412 tcttgaggaaattagagggtttccaccgaatctcaaatgtcttcgtgcattaggatgtaaatcattgagttcctcaaatagaag-attttgttgagtcag 18726314  T
Q  321 gttcgttgttgttttatcttgcaata 346  Q
    ||| ||||||||||| ||||||||||    
T  18726313 gtttgttgttgttttttcttgcaata 18726288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 346
Target Start/End: Complemental strand, 18682170 - 18682056
Alignment:
Q  232 ttagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtcaggttcgttgttg 331  Q
    |||| ||| ||||||| ||||| ||||| |||  ||||||  ||||| |||||||||||| ||||| |||||||||||| |||||||||||| |||||||    
T  18682170 ttagagggtttccaccgaatctcaaatgtcttcgtgcattaggatgtaaatcattgagttgctcaaatagaagaatgttgttgagtcaggtttgttgttg 18682071  T
Q  332 ttttatcttgcaata 346  Q
    |||| ||||||||||    
T  18682070 ttttttcttgcaata 18682056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 18682211 - 18682171
Alignment:
Q  146 caatttcaaaattcttcccgagttccttagtgaatgtcacc 186  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  18682211 caatttcaaaattcttcccgagtgccttagtgaatgtcacc 18682171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 18687103 - 18687063
Alignment:
Q  146 caatttcaaaattcttcccgagttccttagtgaatgtcacc 186  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  18687103 caatttcaaaattcttcccgagtgccttagtgaatgtcacc 18687063  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 18726487 - 18726447
Alignment:
Q  146 caatttcaaaattcttcccgagttccttagtgaatgtcacc 186  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  18726487 caatttcaaaattcttcccgagtgccttagtgaatgtcacc 18726447  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 18652972 - 18652932
Alignment:
Q  146 caatttcaaaattcttcccgagttccttagtgaatgtcacc 186  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  18652972 caatttcaaaattcttcccgagtaccttaatgaatgtcacc 18652932  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 18677054 - 18677014
Alignment:
Q  146 caatttcaaaattcttcccgagttccttagtgaatgtcacc 186  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  18677054 caatttcaaaattcttcccgagtgccttaatgaatgtcacc 18677014  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 18696893 - 18696857
Alignment:
Q  150 ttcaaaattcttcccgagttccttagtgaatgtcacc 186  Q
    ||||||||||||||||||| |||||||||||||||||    
T  18696893 ttcaaaattcttcccgagtgccttagtgaatgtcacc 18696857  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 446 - 480
Target Start/End: Complemental strand, 18696592 - 18696558
Alignment:
Q  446 ccaaacggaatagaggggattccagattggttcga 480  Q
    |||||||||| ||||||||||||||||||||||||    
T  18696592 ccaaacggaacagaggggattccagattggttcga 18696558  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 18728986 - 18728950
Alignment:
Q  150 ttcaaaattcttcccgagttccttagtgaatgtcacc 186  Q
    |||||||||||||| |||| |||||||||||||||||    
T  18728986 ttcaaaattcttcctgagtgccttagtgaatgtcacc 18728950  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 17990462 - 17990414
Alignment:
Q  280 aatcattgagttcctcaagtagaagaatgttattgagtcaggttcgttg 328  Q
    ||||||||| |||||||||||||||||| ||| | ||||||||| ||||    
T  17990462 aatcattgatttcctcaagtagaagaattttacttagtcaggtttgttg 17990414  T

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