View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9146_low_4 (Length: 492)
Name: NF9146_low_4
Description: NF9146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9146_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 49056086 - 49055607
Alignment:
| Q |
1 |
tgtatttcttcagtgaagagatgggatccctaccagctgcaaaataagat-----gatgggttgttaccaacttgcaagacaaaaagaagaaaaatgcga |
95 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49056086 |
tgtattacttcagtgaagagatgggatccctaccagctgcaaaataagattagatgatgggttgttaccaacttgcaagacaaaaagaagaaaaatgcga |
49055987 |
T |
|
| Q |
96 |
acaactcattttagcagacatggaaatttagtgtcttgttaaaattagtaatacagttgtctcgatcataaaatgctaatcagcgaccaaaatcaatcat |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49055986 |
acaactcattttagcagacatggaaatttagtgtcttgttaaaattagtaatacagttgtctcgatcataaaatgctaatcagcgaccaaaatcaatcat |
49055887 |
T |
|
| Q |
196 |
cttacgcatgacataaaacacagttggcctccaaacatgcaaagaaaagtgctcttcaaattaattaaattcctcagtgttaaggaagttaatgcgggat |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49055886 |
cttacgcatgacataaaacacagttggcctccaaacatggaaagaaaagtgctcttcaaattaattaaattcctcagtgttaaggaagttaatgcgggat |
49055787 |
T |
|
| Q |
296 |
aaagtatatgacaaaaataaacatatgtggattatgcatgcacgatgcgactgaaggtaagtaggtagttaaaggaaagcataatgcaaatactcaccag |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49055786 |
aaagtatatgacaaaaataaacatatgtggattatgcatgcacgatgcgactgaaggtaagtaggtagttaaaggaaagcataatgcaaatgctcaccag |
49055687 |
T |
|
| Q |
396 |
ggttgcaaagctcatcagggtcagccaatgaatgtcctctaaatctataggtctcacattctatcaaagttggtccctct |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49055686 |
ggttgcaaagctcatcagggtcagccaatgaatgtcctctaaatctataggtctcacattctatcaaagttggtccctct |
49055607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 383 - 456
Target Start/End: Original strand, 8915617 - 8915690
Alignment:
| Q |
383 |
aaatactcaccagggttgcaaagctcatcagggtcagccaatgaatgtcctctaaatctataggtctcacattc |
456 |
Q |
| |
|
|||| |||||||||||| | |||||||||||| |||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
8915617 |
aaatgctcaccagggttacgaagctcatcaggatcagccaatgaatgtcctctaaatctgtaagtctcacattc |
8915690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University