View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9147_high_18 (Length: 227)
Name: NF9147_high_18
Description: NF9147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9147_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 42678978 - 42678768
Alignment:
| Q |
1 |
ccagcttgatggcacttcccaatggcccgatccacatgaagaatactcgcaacttgttcaagaccgccataaagtgcatttgaatagcgaatcatatact |
100 |
Q |
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| T |
42678978 |
ccagcttgatggcacttaccaatggcccgatccacatgaagaatactcgcaacttgttcaagaccgccataaagtgcatttgaatagcgaatcatatact |
42678879 |
T |
|
| Q |
101 |
tgatatcatacacattccttccaaataattctctcaaaacatgcaaaaactctttcaagctacgaggaagataatgccgcgttaagattttcaccagata |
200 |
Q |
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| T |
42678878 |
tgatatcatacacattccttccaaataattctctcaaaacatgcaaaaactctttcaagctacgaggaagataatgccgcgttaagattttcaccagata |
42678779 |
T |
|
| Q |
201 |
tccaaaatcat |
211 |
Q |
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||||||||||| |
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| T |
42678778 |
tccaaaatcat |
42678768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 54703769 - 54703978
Alignment:
| Q |
1 |
ccagcttgatggcacttcccaatggcccgatccacatgaagaatactcgcaacttgttcaagaccgccataaagtgcatttgaatagcgaatcatatact |
100 |
Q |
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||||||||||| |||| ||||||||||||||||| | |||||| | ||||| |||||||||| |||| |||||| | | ||||| || ||||||| |
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| T |
54703769 |
ccagcttgatgtgactttccaatggcccgatccacgtcgagaatattagcaacccgttcaagaccaccatgtagtgcactacagtagcggatgatatact |
54703868 |
T |
|
| Q |
101 |
tgatatcatacacattccttccaaataattctctcaaaacatgcaaaaactctttcaagctacgaggaagataatgccgcgttaagattttcaccagata |
200 |
Q |
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| T |
54703869 |
tcatatcatacactttacttccaaataattctctcaaaaatttcaaaaagtcttccaagctattcgggagataactctgtgttagtatttttaccagata |
54703968 |
T |
|
| Q |
201 |
tccaaaatca |
210 |
Q |
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|||||||||| |
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| T |
54703969 |
tccaaaatca |
54703978 |
T |
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