View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9147_high_20 (Length: 204)
Name: NF9147_high_20
Description: NF9147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9147_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 4e-83; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 12733876 - 12733705
Alignment:
| Q |
15 |
aatactcttcatgttccattttcatacataaattaatcatagttaaaccaataagctttgtgcaggaaagtggtagttcaagacaaaaactcaggcctgg |
114 |
Q |
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| T |
12733876 |
aatactcttcatgttccattttcatacataaattaatcatagttaaaccaagaagctttgtgcaggaaagtgatagttcaagacaaaaactcaggcctgg |
12733777 |
T |
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| Q |
115 |
gattgggaaatgtgttgtgcaagactggtaaaggttggacatgtgttataactaggactactggacctgatg |
186 |
Q |
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| T |
12733776 |
gattgggaaatgtggtgtgcaagactggtaaaggctggacatgtgttataactaggactactggacctgatg |
12733705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 12796660 - 12796489
Alignment:
| Q |
15 |
aatactcttcatgttccattttcatacataaattaatcatagttaaaccaataagctttgtgcaggaaagtggtagttcaagacaaaaactcaggcctgg |
114 |
Q |
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| T |
12796660 |
aatactcttcatgttccattttcatacataaattaatcatagttaaaccaagaagctttgtgcaggaaagtgatagttcaagacaaaaactcaggcctgg |
12796561 |
T |
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| Q |
115 |
gattgggaaatgtgttgtgcaagactggtaaaggttggacatgtgttataactaggactactggacctgatg |
186 |
Q |
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| T |
12796560 |
gattgggaaatgtggtgtgcaagactggtaaaggctggacatgtgttataactaggactactggacctgatg |
12796489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 12741364 - 12741221
Alignment:
| Q |
29 |
tccattttcatacataaattaatcatagttaaaccaataagctttgtgcaggaaagtggtagttcaagacaaaaactcaggcctgggattgggaaatgtg |
128 |
Q |
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| T |
12741364 |
tccatattcatacataaaaaagtcataattaa-ccaacaagttttgtgtaggaaagtcccagctcaagataaaaattcaggccaaggcttgggcaatgtg |
12741266 |
T |
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| Q |
129 |
ttgtgcaagactggtaaaggttggacatgtgttataactaggact |
173 |
Q |
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| T |
12741265 |
ttgtgcaagacgggtaaaggttggacatgtgttataactaagact |
12741221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 12804179 - 12804036
Alignment:
| Q |
29 |
tccattttcatacataaattaatcatagttaaaccaataagctttgtgcaggaaagtggtagttcaagacaaaaactcaggcctgggattgggaaatgtg |
128 |
Q |
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| T |
12804179 |
tccatattcatacataaaaaagtcataattaa-ccaacaagttttgtgtaggaaagtcccagctcaagataaaaattcaggccaaggcttgggcaatgtg |
12804081 |
T |
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| Q |
129 |
ttgtgcaagactggtaaaggttggacatgtgttataactaggact |
173 |
Q |
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| T |
12804080 |
ttgtgcaagacgggtataggttggacatgtgttataactaagact |
12804036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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