View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9147_high_3 (Length: 496)
Name: NF9147_high_3
Description: NF9147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9147_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 5848298 - 5848118
Alignment:
| Q |
1 |
catgaagctcttagtattatttatccacaaggtcaaaatatggaagctaaccaattagataattacattgatgccctcaggttatcattgccatcatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5848298 |
catgaagctcttagtattatttatccacaaggtcaaaatatggaagctaaccaattggataattacattgatgccctcaggttatcattgccatcatcaa |
5848199 |
T |
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| Q |
101 |
gcagccaaacagttaattacaatacaaaccctagtattcctttaggatggcagccatagttatgtcaagagtatgtagatc |
181 |
Q |
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| T |
5848198 |
gcagccaaacagttaattacaatacaaaccctagtattcctttaggatggcagccatagttatgtcaagagtatgtagatc |
5848118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 5841588 - 5841408
Alignment:
| Q |
1 |
catgaagctcttagtattatttatccacaaggtcaaaatatggaagctaaccaattagataattacattgatgccctcaggttatcattgccatcatcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5841588 |
catgaagctcttagtattatttatccacaaggtcaaaatatggaaactaaccaattggataattacattgatgccctcaggttatcattgccatcatcaa |
5841489 |
T |
|
| Q |
101 |
gcagccaaacagttaattacaatacaaaccctagtattcctttaggatggcagccatagttatgtcaagagtatgtagatc |
181 |
Q |
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| T |
5841488 |
gcagccaaacagttaattacaatacaaaccctagtattcctttaggatggcagccatagttatgtcaagagtatgtagatc |
5841408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 5847742 - 5847562
Alignment:
| Q |
1 |
catgaagctcttagtattatttatccacaaggtcaaaatatggaagctaaccaattagataattacattgatgccctcaggttatcattgccatcatcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5847742 |
catgaagctcttagtattatttatccacaaggtcaaaatatggaaactaaccaattggataattacattgatgccctcaggttatcattgccatcatcaa |
5847643 |
T |
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| Q |
101 |
gcagccaaacagttaattacaatacaaaccctagtattcctttaggatggcagccatagttatgtcaagagtatgtagatc |
181 |
Q |
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| T |
5847642 |
gcagccaaacagttaattacaatacaaaccctagtattcctttaggatggcagccatagttatgtcaagagtatgtagatc |
5847562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 231 - 488
Target Start/End: Complemental strand, 5847512 - 5847257
Alignment:
| Q |
231 |
ctctagagggtttagatttcataaagtaatatgnnnnnnnncatgaagtaatgtttcnnnnnnngttgactgaattaagtgatgtttgttgaagttcaat |
330 |
Q |
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||||||||||| |||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5847512 |
ctctagagggtgtagatttcataaagtaattt-ttttttttcatgaagtaatgtttctttttttgttgactgaattaagtgatgtttgttgaagttcaat |
5847414 |
T |
|
| Q |
331 |
aaaatactatgtaatgtacgtttaggttcatttaatttacatgcatgcatgtacgtttgtcacctaaaattatctatttgcctnnnnnnnnnnnnnnnnn |
430 |
Q |
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| T |
5847413 |
aaaatactatgtaatgtacgtttaggttcatttaatttacatgtatgcatgtacgtttgtcacctaaaattatctatttgcct-ccccccaccccccaca |
5847315 |
T |
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| Q |
431 |
nnnntatttatctgacaaaagccacataaaagtcaaaagccgtacacagacaacacca |
488 |
Q |
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| T |
5847314 |
cccctatttatctgacaaaagccacataaaagtcaaaagccgtatacagacaacacca |
5847257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 5885907 - 5885732
Alignment:
| Q |
1 |
catgaagctcttagtattatttatccacaaggtcaaaatatggaagctaaccaattagataattacattgatgccctcaggttatcattgccatcatcaa |
100 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5885907 |
catgaagctcttagtattatttatccacaagatcaaaatatggaagtggaccaattggataattacacagatgccctcaggttatcattgccatcatcaa |
5885808 |
T |
|
| Q |
101 |
gcagccaaacagttaattacaatacaaaccctagtattcctttaggatggcagccatagttatgtcaagagtatgtagatc |
181 |
Q |
| |
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|||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| |||||||||| |||||||| |
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| T |
5885807 |
gcagccaaacagttaatt-----acaaaccctagtagtcctttaggatggaagccatagttttgtcaagagtgtgtagatc |
5885732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 295 - 488
Target Start/End: Complemental strand, 5841296 - 5841104
Alignment:
| Q |
295 |
gttgactgaattaagtgatgtttgttgaagttcaataaaatactatgtaatgtacgtttaggttcatttaatttacatgcatgcatgtacgtttgtcacc |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
5841296 |
gttgactgaattaagtgatgtttgttgaagttcaataaaataccatgtaatgtacgtttatgttcatttaattgacatgcatgcatgtacgtttgtcacc |
5841197 |
T |
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| Q |
395 |
taaaattatctatttgcctnnnnnnnnnnnnnnnnnnnnntatttatctgacaaaagccacataaaagtcaaaagccgtacacagacaacacca |
488 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5841196 |
taaaagtatctatttgcct-ccccccacccctcacacccctatttatctgacaaaagccacataaaagtcaaaagccgtatacagacaacacca |
5841104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 305 - 413
Target Start/End: Complemental strand, 5885653 - 5885545
Alignment:
| Q |
305 |
ttaagtgatgtttgttgaagttcaataaaatactatgtaatgtacgtttaggttcatttaatttacatgcatgcatgtacgtttgtcacctaaaattatc |
404 |
Q |
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|||||||||| || ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5885653 |
ttaagtgatgctttttgaagttcaataaaatacaatgtaatgtacgtttaggttcacttaatttacatgcatgcatgtacgtttgtcacctaaaagtatc |
5885554 |
T |
|
| Q |
405 |
tatttgcct |
413 |
Q |
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||||||||| |
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| T |
5885553 |
tatttgcct |
5885545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 5920100 - 5920056
Alignment:
| Q |
12 |
tagtattatttatccacaaggtcaaaatatggaagctaaccaatt |
56 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||| ||| ||||| |
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| T |
5920100 |
tagtattacttatccacaagatcaaaatatggaagataatcaatt |
5920056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 5947364 - 5947319
Alignment:
| Q |
307 |
aagtgatgtttgttgaagttcaataaaatactatgtaatgtacgtttagg |
356 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
5947364 |
aagtgatgcttgttgaagttcaataaa----tatgtaatgtacgtttagg |
5947319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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