View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9147_high_4 (Length: 471)
Name: NF9147_high_4
Description: NF9147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9147_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 23169346 - 23169656
Alignment:
| Q |
14 |
ttatactatgccatttttcactgccttttttggtttacaagtataatatgattgagttttcttcnnnnnnnnnnnnnnggtataatttgattgagttgat |
113 |
Q |
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| T |
23169346 |
ttatactatgccatttttcactgccttttttggtttacaagtataatatgattgagttttcttcaaaaaaaaaa-----gtataatatgattgagttgat |
23169440 |
T |
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| Q |
114 |
tctatgatgactcttgatttaatcatgttaaaaggttcaaccccttcatcttaatgctcatgagtcatgattgttgtctttgttgctttttccttatcct |
213 |
Q |
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| T |
23169441 |
tctatgatgactcttgatttaatcatgttaaaaggttcaaccccttcatcttaatgctcatgagtcatgattgttgtctttgttgctttttccttatcct |
23169540 |
T |
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| Q |
214 |
ttcattctagataaaaagagtattaaattgaatatgcaaacaaacattagcttgtagtagaaaggtcaacatgccttaacttgtccaattaaatttggcc |
313 |
Q |
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| T |
23169541 |
ttcattctagataaaaagagtattaaattgaatatg----caaacattagcttgtagtagaaaggtcaacatgccttaacttgtccaattaaatttggcc |
23169636 |
T |
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| Q |
314 |
acgtgccctttcaattttga |
333 |
Q |
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|||||||||||||||||||| |
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| T |
23169637 |
acgtgccctttcaattttga |
23169656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 332 - 456
Target Start/End: Original strand, 23170711 - 23170835
Alignment:
| Q |
332 |
gagaattataaaactagatatgattagtaagatctatcgacatccactttaatctaacacgggtatcactatcgtgaatttagaaagagagggttgagaa |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
23170711 |
gagaattataaaactagatatgattagtaagatctatcaacatccactttaatctaacacgggtatcactgtcttgaatttagaaagagagggttgagaa |
23170810 |
T |
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| Q |
432 |
acattaattatcctcatcttttact |
456 |
Q |
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| T |
23170811 |
acattaatcatactcatcttttact |
23170835 |
T |
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