View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9147_high_5 (Length: 404)
Name: NF9147_high_5
Description: NF9147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9147_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 7 - 386
Target Start/End: Original strand, 46735581 - 46735960
Alignment:
| Q |
7 |
tttggagttgctagggttgaagcggtaaatccaagtgaaatgacgggcagtactggaaccgttgggtatatggcacctgaggtattaattctgctttgaa |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
46735581 |
tttggagttgctagggttgaagcggtaaatccaagtgaaatgacgggcagtactggaaccgttgggtatatggcaccagaggtattaattctgctttgaa |
46735680 |
T |
|
| Q |
107 |
attcactctagatattatgtggttcaatgcgatggctgattatggaagtgttatattttatgattatcactcacgtgactaagaaattggaactctattt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
46735681 |
attcactctagatattatgtggttcaatgcgatggctgattatggaagtgttatattctatgattatcactcacgtgactaagaaattggaactctagtt |
46735780 |
T |
|
| Q |
207 |
caataatttgctttaatcttggcgttaaactatgtgcaggttataaatggtaagccttacaacagaagctgtgatgtctacagctttggcatttgcttgt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46735781 |
caataatttgctttaatcttggcgttaaactatgtgcaggttatatgtggtaagccttacaacagaagctgtgatgtctacagctttggcatttgcttgt |
46735880 |
T |
|
| Q |
307 |
gggaaatttactgttgcgacatgccttatatgaatctaagctttgctgatgcgtcagctgcggttgctgataaggtcagt |
386 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46735881 |
gggaaatttactgctgcgacatgccttatatgaatctaagctttgctgatgcgtcagctgcggttgctgataaggtcagt |
46735960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 57 - 278
Target Start/End: Complemental strand, 19409807 - 19409586
Alignment:
| Q |
57 |
tactggaaccgttgggtatatggcacctgaggtattaattctgctttgaaattcactctagatattatgtggttcaatgcgatggctgattatggaagtg |
156 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19409807 |
tactggaactgttgggtatatggcaccagaggtattaattctgctttgaaattcgctctagatattacgtggttcaatgcgatggctgattatggaagtg |
19409708 |
T |
|
| Q |
157 |
ttatattttatgattatcactcacgtgactaagaaattggaactctatttcaataatttgctttaatcttggcgttaaactatgtgcaggttataaatgg |
256 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| || |||||||||||| |||||||||||||||||| | |
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| T |
19409707 |
ttatattttatgaatatcactcacatgactaagaaattggaacactatttcaataatttgcttgaaacttggcgttaaaatatgtgcaggttataaatag |
19409608 |
T |
|
| Q |
257 |
taagccttacaacagaagctgt |
278 |
Q |
| |
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|| ||||||||||||||||||| |
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| T |
19409607 |
taggccttacaacagaagctgt |
19409586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 253 - 357
Target Start/End: Original strand, 985860 - 985964
Alignment:
| Q |
253 |
atggtaagccttacaacagaagctgtgatgtctacagctttggcatttgcttgtgggaaatttactgttgcgacatgccttatatgaatctaagctttgc |
352 |
Q |
| |
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||||||| ||||||||||| | |||||||| |||||||||||||||||||||||||||||||| || || || ||||||||| ||||||||||||| |
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| T |
985860 |
atggtaaaccttacaacaggacatgtgatgtatacagctttggcatttgcttgtgggaaatttattgctgtgatatgccttatccagatctaagctttgc |
985959 |
T |
|
| Q |
353 |
tgatg |
357 |
Q |
| |
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||||| |
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|
| T |
985960 |
tgatg |
985964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 985378 - 985476
Alignment:
| Q |
7 |
tttggagttgctagggttgaagcggtaaatccaagtgaaatgacgggcagtactggaaccgttgggtatatggcacctgaggtattaattctgctttga |
105 |
Q |
| |
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|||||||||||| |||||||||| | ||||||||||| ||||| || ||||||||| |||| |||||||| |||||||||||||| ||||||||| |
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| T |
985378 |
tttggagttgctcgggttgaagctttgaatccaagtgacatgactggtgaaactggaacccttggatatatggctcctgaggtattaatgctgctttga |
985476 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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