View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9147_high_8 (Length: 313)

Name: NF9147_high_8
Description: NF9147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9147_high_8
NF9147_high_8
[»] chr8 (16 HSPs)
chr8 (1-313)||(5886081-5886393)
chr8 (1-312)||(5841762-5842070)
chr8 (1-312)||(5848472-5848780)
chr8 (1-140)||(5847916-5848055)
chr8 (86-197)||(5920367-5920478)
chr8 (86-246)||(5983554-5983711)
chr8 (109-246)||(5947976-5948110)
chr8 (101-246)||(5959051-5959193)
chr8 (268-306)||(5958774-5958812)
chr8 (268-313)||(5983316-5983361)
chr8 (244-313)||(5841585-5841651)
chr8 (244-313)||(5847739-5847805)
chr8 (244-313)||(5848295-5848361)
chr8 (244-313)||(5885904-5885970)
chr8 (268-311)||(5947706-5947749)
chr8 (284-313)||(5920127-5920156)


Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 5886081 - 5886393
Alignment:
Q  1 tatcacttggattttctttatttggattgatatgaagagccacacaatctaatgaccatggatcttcatcaggaaaaggattagatggtatttgattctc 100  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5886081 tatcacttggattttctttaattcgattgatatgaagagccacacaatctaatgaccatggatcttcatcaggaaaaggattagatggtatttgattctc 5886180  T
Q  101 aatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttagagatgaggttggaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5886181 aatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttagagatgaggttggaagg 5886280  T
Q  201 taaaattgatcttgatgatgatgatgataggagtttaggatcacatgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggc 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5886281 taaaactgatcttgatgatgatgatgataggagtttaggatcacatgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggc 5886380  T
Q  301 tttgatcattgac 313  Q
    |||||||||||||    
T  5886381 tttgatcattgac 5886393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 5841762 - 5842070
Alignment:
Q  1 tatcacttggattttctttatttggattgatatgaagagccacacaatctaatgaccatggatcttcatcaggaaaaggattagatggtatttgattctc 100  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  5841762 tatcacttggattttctttatttctattgatatgaagagccacacactctaatgaccatgtatcttcatcagggaaaggattagatggtatttgattctc 5841861  T
Q  101 aatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttagagatgaggttggaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5841862 aatgtcaaggaaattgggattataatggttattgatcatgtctacatttgtatcaatttggtaaaaatttccttgtagatttggagatgaggttggaagg 5841961  T
Q  201 taaaattgatcttgatgatgatgatgataggagtttaggatcacatgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggc 300  Q
    || || ||||||   ||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||  |||||||    
T  5841962 tagaactgatct---tgatgatgatgattggagtttaggatcatttgttccttggaatcagatgaataatctaggatgctacatgcataattttcaaggc 5842058  T
Q  301 tttgatcattga 312  Q
    ||||||||||||    
T  5842059 tttgatcattga 5842070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 5848472 - 5848780
Alignment:
Q  1 tatcacttggattttctttatttggattgatatgaagagccacacaatctaatgaccatggatcttcatcaggaaaaggattagatggtatttgattctc 100  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  5848472 tatcacttggattttctttatttctattgatatgaagagccacacactctaatgaccatgtatcttcatcagggaaaggattagatggtatttgattctc 5848571  T
Q  101 aatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttagagatgaggttggaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5848572 aatgtcaaggaaattgggattataatggttattgatcatgtctacatttgtatcaatttggtaaaaatttccttgtagatttggagatgaggttggaagg 5848671  T
Q  201 taaaattgatcttgatgatgatgatgataggagtttaggatcacatgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggc 300  Q
    || || ||||||   ||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||  |||||||    
T  5848672 tagaactgatct---tgatgatgatgattggagtttaggatcatttgttccttggaatcagatgaataatctaggatgctacatgcataattttcaaggc 5848768  T
Q  301 tttgatcattga 312  Q
    ||||||||||||    
T  5848769 tttgatcattga 5848780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 5847916 - 5848055
Alignment:
Q  1 tatcacttggattttctttatttggattgatatgaagagccacacaatctaatgaccatggatcttcatcaggaaaaggattagatggtatttgattctc 100  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  5847916 tatcacttggattttctttatttctattgatatgaagagccacacactctaatgaccatgtatcttcatcagggaaaggattagatggtatttgattctc 5848015  T
Q  101 aatgtcaaggaaattgggattataatggttattgatcatg 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5848016 aatgtcaaggaaattgggattataatggttattgatcatg 5848055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 5920367 - 5920478
Alignment:
Q  86 tggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttaga 185  Q
    ||||||| |||| | ||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||    
T  5920367 tggtattggattttgaatgtgaaggaaattgccattataatggttattgatcatgtctacctttgtatcaatttggtgaaaattaccttgtagatttgga 5920466  T
Q  186 gatgaggttgga 197  Q
    ||||||||||||    
T  5920467 gatgaggttgga 5920478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 246
Target Start/End: Original strand, 5983554 - 5983711
Alignment:
Q  86 tggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttaga 185  Q
    ||||||| |||| | ||||| | ||||||||| ||||||||||| ||||||   ||||||||||||||||||||| | |||||| |||||||||||| ||    
T  5983554 tggtattggattttgaatgtgagggaaattggcattataatggtcattgat---gtctacctttgtatcaatttgatgaaaattaccttgtagatttgga 5983650  T
Q  186 gatgaggttggaaggtaaaattgatcttgatgatgatgatgataggagtttaggatcacat 246  Q
    |||||||||| | |||| |  | ||||||||| | || ||||| | |||| ||||||||||    
T  5983651 gatgaggttgaatggtataggtaatcttgatggttataatgattgaagttgaggatcacat 5983711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 5947976 - 5948110
Alignment:
Q  109 ggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttagagatgaggttggaaggtaaaattg 208  Q
    ||||||||| ||||||||||| ||||||   ||||||||||||||||||||| | |||||| |||||||||||| |||||||||||| | |||| |  |     
T  5947976 ggaaattggcattataatggtcattgat---gtctacctttgtatcaatttgatgaaaattaccttgtagatttggagatgaggttgaatggtataggta 5948072  T
Q  209 atcttgatgatgatgatgataggagtttaggatcacat 246  Q
    ||||||||| | || ||||| | |||| ||||||||||    
T  5948073 atcttgatggttataatgattgaagttgaggatcacat 5948110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 246
Target Start/End: Original strand, 5959051 - 5959193
Alignment:
Q  101 aatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttagagatgaggttggaagg 200  Q
    ||||| ||||||||||| ||||||||||| ||||||   ||||||||||||||||||||| | |||||| | |||  ||||| |||||||||||| | ||    
T  5959051 aatgtgaaggaaattggcattataatggtcattgat---gtctacctttgtatcaatttgatgaaaattactttgctgatttggagatgaggttgaatgg 5959147  T
Q  201 taaaattgatcttgatgatgatgatgataggagtttaggatcacat 246  Q
    || |  | ||||||||| |||||||||| | |||| ||| ||||||    
T  5959148 tataggtaatcttgatggtgatgatgattgaagttgagggtcacat 5959193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 5958774 - 5958812
Alignment:
Q  268 aatctaggatgctacaagcataatcctcaaggctttgat 306  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5958774 aatctaggatgctacaagcataatcctcaaggctttgat 5958812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 5983316 - 5983361
Alignment:
Q  268 aatctaggatgctacaagcataatcctcaaggctttgatcattgac 313  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||    
T  5983316 aatctaggatgttacaagcataatcctcaaggctttgatgattgac 5983361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 5841585 - 5841651
Alignment:
Q  244 catgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggctttgatcattgac 313  Q
    ||||||||||||||||| ||||||   ||||||||| |||| |||  |||||||||||||||||||||||    
T  5841585 catgttccttggaatcaaatgaat---ctaggatgcaacaatcatggtcctcaaggctttgatcattgac 5841651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 5847739 - 5847805
Alignment:
Q  244 catgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggctttgatcattgac 313  Q
    ||||||||||||||||| ||||||   ||||||||| |||| |||  |||||||||||||||||||||||    
T  5847739 catgttccttggaatcaaatgaat---ctaggatgcaacaatcatggtcctcaaggctttgatcattgac 5847805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 5848295 - 5848361
Alignment:
Q  244 catgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggctttgatcattgac 313  Q
    ||||||||||||||||| ||||||   ||||||||| |||| |||  |||||||||||||||||||||||    
T  5848295 catgttccttggaatcaaatgaat---ctaggatgcaacaatcatggtcctcaaggctttgatcattgac 5848361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 5885904 - 5885970
Alignment:
Q  244 catgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggctttgatcattgac 313  Q
    |||||| |||||||||||||||||   | ||||||| |||| |||  |||||||||||||||||||||||    
T  5885904 catgtttcttggaatcagatgaat---ccaggatgcaacaatcatgttcctcaaggctttgatcattgac 5885970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 311
Target Start/End: Original strand, 5947706 - 5947749
Alignment:
Q  268 aatctaggatgctacaagcataatcctcaaggctttgatcattg 311  Q
    |||||||||||||| |||| ||||||||||||||||||| ||||    
T  5947706 aatctaggatgctagaagcgtaatcctcaaggctttgatgattg 5947749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 313
Target Start/End: Original strand, 5920127 - 5920156
Alignment:
Q  284 agcataatcctcaaggctttgatcattgac 313  Q
    ||||||||||||||||||||||||||||||    
T  5920127 agcataatcctcaaggctttgatcattgac 5920156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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