View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9147_high_9 (Length: 294)
Name: NF9147_high_9
Description: NF9147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9147_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 8137080 - 8136803
Alignment:
| Q |
1 |
agggtcaacaaagatcaatgaagccttgaaacaatttaatgaggatatgcttgaagctgaaatgagtagttatgggataatcacaaattcttttgaggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8137080 |
agggtcaacaaagatcaatgaagccttgaaacaatttaatgaggatatgcttgaagctgaaatgagtagttatgggataatcacaaattcttttgaggag |
8136981 |
T |
|
| Q |
101 |
ttagagccaacatatgcaacagactttaaaaagatgaaaaatgacaaagtttggtgtattggacctgtatcacttagtaacattgatgacttggataagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8136980 |
ttagagccaacatatgcaacagactttaaaaagatgaaaaatgacaaagtttggtgtattggacctgtatcacttagtaacattgatgacttggataagg |
8136881 |
T |
|
| Q |
201 |
ttcaaagaggtaatagtaacaaagttttagttcatgaatggaagcacttgaagtggctagattctcataaggatgaga |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8136880 |
ttcaaagaggtaatagtaacaaagttttagttcatgaatggaagcacttgaagtggctaaattctcataaggatgaga |
8136803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 28 - 270
Target Start/End: Original strand, 41536627 - 41536872
Alignment:
| Q |
28 |
gaaacaatttaatgaggatatgcttgaagctgaaatgagtagttatgggataatcacaaattcttttgaggagttagagccaacatatgcaacagacttt |
127 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| ||||||||||||| || ||||||||||| |||||||||||||||||||||| || | | |
|
|
| T |
41536627 |
gaaacaatttaatgatgacttgcttgaagctgaaataggtagttatgggatgctcgtgaattcttttgaagagttagagccaacatatgcaagggattat |
41536726 |
T |
|
| Q |
128 |
aaaaagatgaaaaatgacaaagtttggtgtattggacctgtatcacttagtaacattgatgacttggataaggttcaaagagg---taatagtaacaaag |
224 |
Q |
| |
|
|||||| | | |||||| ||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||| ||||| ||| || | |
|
|
| T |
41536727 |
aaaaaggtaagaaatgataaagtttggtgtattggtcctgtatcacttagtaacactgattacttggataaggttcaaagaggtaataataataataagg |
41536826 |
T |
|
| Q |
225 |
ttttagttcatgaatggaagcacttgaagtggctagattctcataa |
270 |
Q |
| |
|
||| | | |||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
41536827 |
tttcaaatgatgaatgggagcacttgaagtggcttgattctcataa |
41536872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 53 - 267
Target Start/End: Original strand, 41517676 - 41517890
Alignment:
| Q |
53 |
gaagctgaaatgagtagttatgggataatcacaaattcttttgaggagttagagccaacatatgcaacagactttaaaaagatgaaaaatgacaaagttt |
152 |
Q |
| |
|
|||||||||||| ||| |||||| |||||| ||||||||||| |||||||||||| ||||||||| || ||||||||| | |||||||||||||||| |
|
|
| T |
41517676 |
gaagctgaaatgggtacttatggtgtaatcatgaattcttttgaagagttagagccagcatatgcaagggaatttaaaaaggtaaaaaatgacaaagttt |
41517775 |
T |
|
| Q |
153 |
ggtgtattggacctgtatcacttagtaacattgatgacttggataaggttcaaagaggtaatagtaacaaagttttagttcatgaatggaagcacttgaa |
252 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| |||| ||||||||||| ||||||||||||||| ||| || |||| | || |||||||| |||| ||||| |
|
|
| T |
41517776 |
ggtgcattggtcctgtatcacttagtaacactgattacttggataagattcaaagaggtaataataataaggtttcaattgatgaatgggagcatttgaa |
41517875 |
T |
|
| Q |
253 |
gtggctagattctca |
267 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
41517876 |
gtggcttgattctca |
41517890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University