View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9147_low_1 (Length: 1818)
Name: NF9147_low_1
Description: NF9147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9147_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 1633; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 1633; E-Value: 0
Query Start/End: Original strand, 18 - 1801
Target Start/End: Complemental strand, 34876603 - 34874815
Alignment:
| Q |
18 |
attaaccgcagacaagggttacaacattgttacacactttcaatagcactattacaatcgagtctgctaaactaagacatgaatgctgaggcaatttctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34876603 |
attaaccgcagacaagggttacaacattgttacacactttcaatagcactattacaatcgagtctgctaaactaagacatgaatgctgaggcaatttctt |
34876504 |
T |
|
| Q |
118 |
taggattgagataatcttgaaatagtaacactcaggattgagataatcttgaaattatttatgttataggcataaaaaacatctaacggaaatcatgcag |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34876503 |
taggattgagataatcttgaaatagtatcactcaggattgagataatcttgaaattatttatgttataggcataaaaaacatctaacggaaatcatgcag |
34876404 |
T |
|
| Q |
218 |
taccaacattttcaaattgaaggtgtgtgtgatgtttgtgactgcgtcggtgcttcatagaacacaatttctcgtgcagatattgacttattgtctattc |
317 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34876403 |
taccaacattt-cagattgaaggtgtgtgtgatgtttgtgactgcgtcggtgcttcatagaacacaatttctcgtgcagatattgacttattgtctattc |
34876305 |
T |
|
| Q |
318 |
ttttagtaatatttctttcttagttgtcttttccatccaatttaaagctgcaacagcaatggacttagattcataactcattagtaaccctctgaaagtg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34876304 |
ttttagtaatatttctttcttagttgtcttttccatccaatttaaagctgcaacagcaatggacttagattcataactcattagtaaccctctgaaagtg |
34876205 |
T |
|
| Q |
418 |
ttgcattctgcaggtggtaatgttggtcctggttctaatatttgcgggtgtccacagtggcctggccagcttccgtgacactggtgagaaactcattggt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| |
|
|
| T |
34876204 |
ttgcattctgcaggtggtaatgttggtcctggttctcatatttgcgggtgtccacagtggcctggccagcttccgtgacaccggagagaaactcatcggt |
34876105 |
T |
|
| Q |
518 |
gaacgagcttaccgtgttctttttgcaggcacatcgctacctttggctctcacaatgattgtgagtttgtgcacgnnnnnnn-ccatataagctgcaaaa |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
34876104 |
gaacgagcttaccgtgttctttttgcaggcacatcgctacctttggctctcacaatgattgtgagtttgtgaacgttttttttccatataagctgcaaaa |
34876005 |
T |
|
| Q |
617 |
gaaaacttcaatatatatagtgatatgattgctttatttgttttgacccaaataattttattaggacaattgaagttgattcaaattttaaaataatatt |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34876004 |
gaaaacttcaatatatatagtgatatgattgctttatttgttttgacccaaataattttattaggacaattgaagttgattcaaattttaaaataatatt |
34875905 |
T |
|
| Q |
717 |
ttctcatccatgtttcggtttatgatgcaggtgtattttattaatcacagatatgatggacttcagctctggcagctccaagatgttcctggggttcatc |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34875904 |
ttctcatccatgtttcggtttatgatgcaggtgtattttattaatcacagatatgatggacttcagctctggcagctccaagatgttcctggggttcatc |
34875805 |
T |
|
| Q |
817 |
aacttgtgtggatttctaacttcatctccttccttttcctgtatcctgcaacctttaatcttttagaggttgcagcagttgacaagcctaagttacatct |
916 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34875804 |
aacttgtgtggatttctaacttcatctccttccttttcctgtatcctgcaacctttaatcttttagaggttgcagcagttgacaagcctaagttacatct |
34875705 |
T |
|
| Q |
917 |
ctatgaaactggaattatgagaataaccaggcatccacaggtatacacaaatccaaataattgcatagatcaaaaaataaagtaagacactgatgaattt |
1016 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34875704 |
ctatgaaactggaattatgagaataaccaggcatccacaggtatactcaaatccaaataattgcatagatcaaaaaataaagtaagacactgatgaattt |
34875605 |
T |
|
| Q |
1017 |
ggggcttttatgattttgatgatcatggtaacttggacaagtagtaatcacatattgtcaactttgtgaatcaaggttctcnnnnnnnnnnnn-----ca |
1111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34875604 |
ggggcttttatgattttgatgatcatggtaacttggacaagtagtaatcacatattgtcaactttgtgaatcaaggttctctttttttttttttttttca |
34875505 |
T |
|
| Q |
1112 |
aaggttgcatattaatgttggttaagaaagtcaatcttcaagcagtttaccatgagaaatcccatttctgacatcaagtcaagaaccattaaaaatttca |
1211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34875504 |
aaggttgcatattaatgttggttaagaaagtcaatcttcaagcagtttaccatgagaaatcccatttctgacatcaagacaagaaccattaaaaatttca |
34875405 |
T |
|
| Q |
1212 |
catacttcattttatgcttggagaatttctttatatgcactgtatagtgtatactatgtttaatcaagtaaatacccaatttggtttctggatttgaaag |
1311 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34875404 |
catacttcattttatgcttggagaagttctttatatgcactttatagtgtgtactatgtttaatcaagtaaatacccaatttggtttctggattcgaaag |
34875305 |
T |
|
| Q |
1312 |
actgtatcaacaacttagtcttccatattatcaatatttcaaactgatccctagaattgtataatgttattcaggtacgtccctccgtcaggatcagtta |
1411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34875304 |
actgtatcaacaacttagtcttccatattatcaatatttcaaactgatccctagaattgtataatgttattcaggtacgtccctccgtcaggatcagtta |
34875205 |
T |
|
| Q |
1412 |
tcaaatgcatccttaacattgttcagttaatttcaaacgcacccctgacattattaacttaatgttataatagtacctacaaatattaacgcagggacaa |
1511 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34875204 |
tcaaatgcatccctaacattgttcagttaatttcaaacgcacccctgacattattaacttaatgttataatagtacctacaaatattaacgcagggacga |
34875105 |
T |
|
| Q |
1512 |
aattggttaatattttacaattataaggatcattttgtaatattgataatgtaggaaactcggttgatgcagtcataaaagcaggtttcactaacaggtt |
1611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34875104 |
aattggttaatattttacaattataaggatcattttgtaatattgataatgtaggaaactcggttgatgcagtcataaaagcaggtttcactaacaggtt |
34875005 |
T |
|
| Q |
1612 |
ttttctttcacttaaccttattctaaacgaagattttgttttgctttcaagatggttggacaggtcatgtggtgtcttgctcatacagtttggataggaa |
1711 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34875004 |
ttttctttcacttaaccttattctaaatgaagattttgttttgctttcaagatggttggacaggtcatgtggtgtcttgctcatacagtttggataggaa |
34874905 |
T |
|
| Q |
1712 |
attctgtggcggttgcagcttcatttgctttaattgcacaccatttatttggtgtttggaatggagataggaaactagctgaaagatatg |
1801 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34874904 |
attctgtggcggttgcagcttcatttgctttaattgcacaccatttatttggtgtttggaatggagataggaaactagctgaaagatatg |
34874815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 3e-55
Query Start/End: Original strand, 817 - 1096
Target Start/End: Complemental strand, 34868561 - 34868277
Alignment:
| Q |
817 |
aacttgtgtggatttctaacttcatctccttccttttcctgtatcctgcaacctttaatcttttagaggttgcagcagttgacaagcctaagttacatct |
916 |
Q |
| |
|
||||||||||| |||||||||||||||||||| | || |||||||| ||||||||||| ||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
34868561 |
aacttgtgtggctttctaacttcatctccttcttgttgttgtatccttcaacctttaatgttttagaggttgcagcagttgacaagcttatattacatct |
34868462 |
T |
|
| Q |
917 |
ctatgaaactggaattatgagaataaccaggcatccacaggtat-acacaaatccaaataattgcatagatcaaaaaataaa---gtaagacactgatga |
1012 |
Q |
| |
|
||||||||||| ||||||||||| | |||| |||||| ||| | | ||||||||||| ||||||||| |||||||| || ||||||||| |||| |
|
|
| T |
34868461 |
ctatgaaactgaaattatgagaacatccagacatccaatggtttcaaacaaatccaaacaattgcatatatcaaaaatagaacatgtaagacaccgatgc |
34868362 |
T |
|
| Q |
1013 |
atttggggct-tttatgattttgatgatcatggtaacttggacaagtagtaatcacatattgtcaactttgtgaatcaaggttct |
1096 |
Q |
| |
|
||||||| | |||||||||||||||||| ||| |||||||||| |||||||||| ||||||||| ||||| || |||| |||| |
|
|
| T |
34868361 |
atttgggtttctttatgattttgatgatcttggcaacttggacagatagtaatcacttattgtcaaatttgtaaaccaagtttct |
34868277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 424 - 562
Target Start/End: Complemental strand, 34868914 - 34868779
Alignment:
| Q |
424 |
tctgcaggtggtaatgttggtcctggttctaatatttgcgggtgtccacagtggcctggccagcttccgtgacactggtgagaaactcattggtgaacga |
523 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||||||||| | ||||||||||| || || ||| |
|
|
| T |
34868914 |
tctgcaggtggtaatgttt---ctggttctcatatctgcgggtgtccacagcggcctggccagcttccgtgacacctgcgagaaactcatcggagatcga |
34868818 |
T |
|
| Q |
524 |
gcttaccgtgttctttttgcaggcacatcgctacctttg |
562 |
Q |
| |
|
||||||||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
34868817 |
gcttaccgtgttcgttttgcaggaacatcactacctttg |
34868779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 1007 - 1257
Target Start/End: Complemental strand, 34871808 - 34871545
Alignment:
| Q |
1007 |
tgatgaatttggggcttttatgattttgatgatcatggtaacttggacaagtagtaatcacatattgtcaactttgtgaatcaaggttctcnnnnnnnnn |
1106 |
Q |
| |
|
||||| ||||| || |||| |||||||||||||| ||||||||||||||| ||||||||| ||||| |||| ||||| |||||| ||| |
|
|
| T |
34871808 |
tgatgtatttgaggtttttgtgattttgatgatcttggtaacttggacaaatagtaatcagatattatcaaatttgtacatcaagtgtcttttgtttttt |
34871709 |
T |
|
| Q |
1107 |
nnncaaaggttgcatattaatgttggttaagaaagtcaatcttcaagcagtttac------------catgagaaatcccatttctgacatcaagtcaag |
1194 |
Q |
| |
|
||||||||||||| | ||||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| || | |
|
|
| T |
34871708 |
tcctaaaggttgcatatcagtgttgattaagaaagtcaatcttcaagcattatactacataactatgcatgagaaatcccatttctgacatcaagacagg |
34871609 |
T |
|
| Q |
1195 |
aac-cattaaaaatttcacatacttcattttatgcttggagaatttctttatatgcactgtata |
1257 |
Q |
| |
|
| ||| ||||| || |||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
34871608 |
cagacatgaaaaaatttacatacttcattttatccttggagaatttctttatttgcactgtata |
34871545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1616 - 1787
Target Start/End: Complemental strand, 34867602 - 34867430
Alignment:
| Q |
1616 |
ctttcacttaaccttattctaaacgaagattttgttttgctttcaa-gatggttggacaggtcatgtggtgtcttgctcatacagtttggataggaaatt |
1714 |
Q |
| |
|
||||||||| | |||||||| || ||||||||||||| ||| |||| | | ||||| ||||| || || ||||||||||||| | ||||| ||||||| |
|
|
| T |
34867602 |
ctttcactttatcttattctgaatgaagattttgtttcgctatcaaaggtcgttgggcaggtaatatgatgtcttgctcatatcatatggattggaaatt |
34867503 |
T |
|
| Q |
1715 |
ctgtggcggttgcagcttcatttgctttaattgcacaccatttatttggtgtttggaatggagataggaaact |
1787 |
Q |
| |
|
|||||| ||||| | ||||||||| | |||| ||||| ||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
34867502 |
atgtggctgttgctgtttcatttgcctcaatttcacacaattcatttgatgtttggaatggagatgggaaact |
34867430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1165 - 1239
Target Start/End: Complemental strand, 34868076 - 34868001
Alignment:
| Q |
1165 |
gagaaatcccatttctgacatcaagtcaagaa-ccattaaaaatttcacatacttcattttatgcttggagaattt |
1239 |
Q |
| |
|
||||||||||||| ||||| ||| | |||| | |||| |||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
34868076 |
gagaaatcccattgctgacttcatgacaagtagccatgaaaatttttacatacttcattttatgcttggagaattt |
34868001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 1e-60; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 1e-60
Query Start/End: Original strand, 737 - 960
Target Start/End: Original strand, 38381408 - 38381631
Alignment:
| Q |
737 |
tatgatgcaggtgtattttattaatcacagatatgatggacttcagctctggcagctccaagatgttcctggggttcatcaacttgtgtggatttctaac |
836 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | ||| ||| ||||||||||| ||||| |||| || |
|
|
| T |
38381408 |
tatggtgcaggtgtattttattaatcacagatatgatggaattcaactctggcagctccagagtactccggggattcatcaacttctgtggctttccaat |
38381507 |
T |
|
| Q |
837 |
ttcatctccttccttttcctgtatcctgcaacctttaatcttttagaggttgcagcagttgacaagcctaagttacatctctatgaaactggaattatga |
936 |
Q |
| |
|
|||||||| ||| ||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| || || | |
|
|
| T |
38381508 |
ttcatctctttctttttcctatatccttcaacctttaatcttttagaaattgcagcagttgacaagcctaaaatacatctatatgaaactggcatcataa |
38381607 |
T |
|
| Q |
937 |
gaataaccaggcatccacaggtat |
960 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
38381608 |
gaataaccaggcatccacaggtat |
38381631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 1646 - 1782
Target Start/End: Original strand, 38381990 - 38382126
Alignment:
| Q |
1646 |
tttgttttgctttcaagatggttggacaggtcatgtggtgtcttgctcatacagtttggataggaaattctgtggcggttgcagcttcatttgctttaat |
1745 |
Q |
| |
|
||||||||||| | |||||||||| ||||| || |||||||||||||||||| ||||||| |||||||||||||| |||||||||||| ||| ||||| |
|
|
| T |
38381990 |
tttgttttgctgttcagatggttggtcaggtaatctggtgtcttgctcatacaatttggattggaaattctgtggctgttgcagcttcaattggcttaat |
38382089 |
T |
|
| Q |
1746 |
tgcacaccatttatttggtgtttggaatggagatagg |
1782 |
Q |
| |
|
| |||| ||| ||||||||| |||||||||||||||| |
|
|
| T |
38382090 |
ttcacatcatctatttggtgcttggaatggagatagg |
38382126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 570
Target Start/End: Original strand, 38381128 - 38381271
Alignment:
| Q |
427 |
gcaggtggtaatgttggtcctggttctaatatttgcgggtgtccacagtggcctggccagcttccgtgacactggtgagaaactcattggtgaacgagct |
526 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||||| | | ||||||||||| |||| ||| | || | || ||||||||| ||||||||||| ||||| |
|
|
| T |
38381128 |
gcaggtggtaatgttgatcctaattctcgtatttgccgttttccacagtggcatggctagcctacggaataccggtgagaaaatcattggtgaaagagct |
38381227 |
T |
|
| Q |
527 |
taccgtgttctttttgcaggcacatcgctacctttggctctcac |
570 |
Q |
| |
|
| || ||| |||||||||| | ||| |||||||| ||| |||| |
|
|
| T |
38381228 |
tttcgggttatttttgcagggatatcactacctttagctgtcac |
38381271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1518 - 1561
Target Start/End: Original strand, 7145583 - 7145626
Alignment:
| Q |
1518 |
ttaatattttacaattataaggatcattttgtaatattgataat |
1561 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
7145583 |
ttaatattttacaattatagggatcattttggaatattgataat |
7145626 |
T |
|
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