View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9147_low_15 (Length: 403)
Name: NF9147_low_15
Description: NF9147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9147_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 398
Target Start/End: Original strand, 38169775 - 38170156
Alignment:
| Q |
20 |
aacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacaccat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38169775 |
aacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacaccat |
38169874 |
T |
|
| Q |
120 |
tttattatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaacttc---ttctttttgttgttgtaattttttatctc |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38169875 |
tttactatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaacttcttcttctttttgttgttgtaattttttatctc |
38169974 |
T |
|
| Q |
217 |
taataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaacata |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38169975 |
taataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaacata |
38170074 |
T |
|
| Q |
317 |
aacaacagacttttcatcctttgaatccaaccattgaatgtaatcatcctttgagtcaacacggacaacgtcaccaccaaac |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38170075 |
aacaacagacttttcatcctttgaatccaaccattgaatgtaatcatcctttgagtcaacacggacaacgtcaccaccaaac |
38170156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 395
Target Start/End: Original strand, 38184258 - 38184636
Alignment:
| Q |
20 |
aacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacaccat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184258 |
aacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacaccat |
38184357 |
T |
|
| Q |
120 |
tttattatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaacttcttctttttgttgttg--taa-ttttttatctc |
216 |
Q |
| |
|
|| | |||||||||||| | ||| |||||||||||||||||||||| | ||||||| |||| | || |||| || |||||| ||| ||||| ||||| |
|
|
| T |
38184358 |
ttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcactatcaccctcctcttctttttgttgcataactttttcatctc |
38184457 |
T |
|
| Q |
217 |
taataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaacata |
316 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
38184458 |
taattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacata |
38184557 |
T |
|
| Q |
317 |
aacaacagacttttcatcctttgaatccaaccattgaatgtaatcatcctttgagtcaacacggacaacgtcaccacca |
395 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||| || ||||| ||| | ||| |||||| |||||| |||||||| |
|
|
| T |
38184558 |
aaccacagacgattcatcctttgaatccaaccattcaaagtaattatcttctgattcaacatcgacaacaccaccacca |
38184636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 20 - 385
Target Start/End: Original strand, 38179589 - 38179957
Alignment:
| Q |
20 |
aacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacaccat |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38179589 |
aacccctgaacctaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacctaaagaacggtgcgacaaaacctccacctgactacaccat |
38179688 |
T |
|
| Q |
120 |
tttattatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaacttcttctttttgttgttg--taa-ttttttatctc |
216 |
Q |
| |
|
|| | |||||||||||| | ||| ||||||| |||||||||||||| | ||||||| |||| | || |||| || |||||| ||| ||||| ||||| |
|
|
| T |
38179689 |
ttcactatcttcccattaacattcctctcaagctcctctctacaacttaactcatcactatcaccctcctcttctttttgttgcataactttttcatctc |
38179788 |
T |
|
| Q |
217 |
taataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaacata |
316 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
38179789 |
taattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctattggacaaaatagcaagagtaccaaatgaaacata |
38179888 |
T |
|
| Q |
317 |
aacaacagacttttcatcctttgaatccaaccattgaatgtaatcatcctttgagtcaacacggacaac |
385 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||| || ||||| ||| | ||| ||||||| |||||| |
|
|
| T |
38179889 |
aaccacagacgattcatcctttgaatccaaccattcaaagtaattatcttctgattcaacaccgacaac |
38179957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 216 - 325
Target Start/End: Complemental strand, 35053994 - 35053885
Alignment:
| Q |
216 |
ctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaacat |
315 |
Q |
| |
|
|||| |||||||||||| | ||||||| |||||||||| ||| |||||||||||||| ||||||| | |||||||||| | ||||||||||||||| |
|
|
| T |
35053994 |
ctaagaacccacaagaatggaaatccacaatccaacaaagcatgtgcaatttcctccctttgtctctcagacaaaacaaagtaactaccaaatgaaacat |
35053895 |
T |
|
| Q |
316 |
aaacaacaga |
325 |
Q |
| |
|
|||| ||||| |
|
|
| T |
35053894 |
aaaccacaga |
35053885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 35060896 - 35060845
Alignment:
| Q |
31 |
ccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaa |
82 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| |||| |||||||||||| |
|
|
| T |
35060896 |
ccaaactttccaaagtcgagttccaaccacaatgagtcaaaaaacaacccaa |
35060845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 322
Target Start/End: Complemental strand, 35060750 - 35060641
Alignment:
| Q |
213 |
tctctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaa |
312 |
Q |
| |
|
||||| || ||||||||||| ||||| ||| ||| |||||| |||| |||||||||||| |||||| | |||||||||| | ||||||| |||| |
|
|
| T |
35060750 |
tctctcatgacccacaagaatgaaaacccacaattcaacaacgcacttgcaatttcctctgtttgtcgctcagacaaaacaaagtaactaccaaaagaaa |
35060651 |
T |
|
| Q |
313 |
cataaacaac |
322 |
Q |
| |
|
|||||||||| |
|
|
| T |
35060650 |
cataaacaac |
35060641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University