View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9147_low_16 (Length: 381)
Name: NF9147_low_16
Description: NF9147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9147_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 47407085 - 47406721
Alignment:
| Q |
1 |
tagggcccaagctcatactgttttgatgttttgctttatttcatggacgtgttgttattttggtttccgactggggtgctccattgtaaaccccaagtta |
100 |
Q |
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| T |
47407085 |
tagggcccaagctcatactgttttgatgttttgctttatttcatggacgtgttgttattttggtttccgactggggtgctcccttgtaaaccccaagtta |
47406986 |
T |
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| Q |
101 |
cctttatgcctgaacttgagttagtaatgcaagtcatatttccatttatgccaaaactgaatccaattcttaatgattcgtaaacttcatttctaattca |
200 |
Q |
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| T |
47406985 |
cctttatgcctgaacttgagttagtaatatcagtcatatttccatttgtgccaaaactgaatccaattcttaatgattcgtaaacttcatttctaattca |
47406886 |
T |
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| Q |
201 |
aattgaaattcagctgtttatttgtccagtcttcaattgaatttcgaggat-gaattattttaagagaggtagaatgtaacgaaccttaattttgtattt |
299 |
Q |
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| T |
47406885 |
aattgaaattcagctgtttatttgtccagtgttcaattgaatttcgaggatggaattattttaagagaggtagaatgtaacgaaccttaattttgtattt |
47406786 |
T |
|
| Q |
300 |
ttagtaattcaatactagattaagtaaccgaaaccttcaacttttgtacattttgcctatattct |
364 |
Q |
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| T |
47406785 |
ttagtaattcaatactggattaagtaaccgaaaccttcaacttttgtacattttgcctatattct |
47406721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 195 - 301
Target Start/End: Complemental strand, 47417608 - 47417498
Alignment:
| Q |
195 |
aattcaaattgaaattcagctgtttatttgtcca---gtcttcaattgaatttcgaggatg-aattattttaagagaggtagaatgtaacgaaccttaat |
290 |
Q |
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||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||| | |||| ||||||||| ||| ||||||||| || |||| |
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| T |
47417608 |
aattcaaattgaaattctgctgtttattcgtccaatgatcttcaattgaatttctaggacgaaattgttttaagaggagtaaaatgtaacggcccataat |
47417509 |
T |
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| Q |
291 |
tttgtattttt |
301 |
Q |
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| T |
47417508 |
tttgtcttttt |
47417498 |
T |
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