View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9147_low_18 (Length: 313)

Name: NF9147_low_18
Description: NF9147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9147_low_18
NF9147_low_18
[»] chr8 (16 HSPs)
chr8 (1-313)||(5886081-5886393)
chr8 (1-312)||(5841762-5842070)
chr8 (1-312)||(5848472-5848780)
chr8 (1-140)||(5847916-5848055)
chr8 (86-197)||(5920367-5920478)
chr8 (86-246)||(5983554-5983711)
chr8 (109-246)||(5947976-5948110)
chr8 (101-246)||(5959051-5959193)
chr8 (268-306)||(5958774-5958812)
chr8 (268-313)||(5983316-5983361)
chr8 (244-313)||(5841585-5841651)
chr8 (244-313)||(5847739-5847805)
chr8 (244-313)||(5848295-5848361)
chr8 (244-313)||(5885904-5885970)
chr8 (268-311)||(5947706-5947749)
chr8 (284-313)||(5920127-5920156)


Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 5886081 - 5886393
Alignment:
Q  1 tatcacttggattttctttatttggattgatatgaagagccacacaatctaatgaccatggatcttcatcaggaaaaggattagatggtatttgattctc 100  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5886081 tatcacttggattttctttaattcgattgatatgaagagccacacaatctaatgaccatggatcttcatcaggaaaaggattagatggtatttgattctc 5886180  T
Q  101 aatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttagagatgaggttggaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5886181 aatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttagagatgaggttggaagg 5886280  T
Q  201 taaaattgatcttgatgatgatgatgataggagtttaggatcacatgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggc 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5886281 taaaactgatcttgatgatgatgatgataggagtttaggatcacatgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggc 5886380  T
Q  301 tttgatcattgac 313  Q
    |||||||||||||    
T  5886381 tttgatcattgac 5886393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 5841762 - 5842070
Alignment:
Q  1 tatcacttggattttctttatttggattgatatgaagagccacacaatctaatgaccatggatcttcatcaggaaaaggattagatggtatttgattctc 100  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  5841762 tatcacttggattttctttatttctattgatatgaagagccacacactctaatgaccatgtatcttcatcagggaaaggattagatggtatttgattctc 5841861  T
Q  101 aatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttagagatgaggttggaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5841862 aatgtcaaggaaattgggattataatggttattgatcatgtctacatttgtatcaatttggtaaaaatttccttgtagatttggagatgaggttggaagg 5841961  T
Q  201 taaaattgatcttgatgatgatgatgataggagtttaggatcacatgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggc 300  Q
    || || ||||||   ||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||  |||||||    
T  5841962 tagaactgatct---tgatgatgatgattggagtttaggatcatttgttccttggaatcagatgaataatctaggatgctacatgcataattttcaaggc 5842058  T
Q  301 tttgatcattga 312  Q
    ||||||||||||    
T  5842059 tttgatcattga 5842070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 5848472 - 5848780
Alignment:
Q  1 tatcacttggattttctttatttggattgatatgaagagccacacaatctaatgaccatggatcttcatcaggaaaaggattagatggtatttgattctc 100  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  5848472 tatcacttggattttctttatttctattgatatgaagagccacacactctaatgaccatgtatcttcatcagggaaaggattagatggtatttgattctc 5848571  T
Q  101 aatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttagagatgaggttggaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5848572 aatgtcaaggaaattgggattataatggttattgatcatgtctacatttgtatcaatttggtaaaaatttccttgtagatttggagatgaggttggaagg 5848671  T
Q  201 taaaattgatcttgatgatgatgatgataggagtttaggatcacatgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggc 300  Q
    || || ||||||   ||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||  |||||||    
T  5848672 tagaactgatct---tgatgatgatgattggagtttaggatcatttgttccttggaatcagatgaataatctaggatgctacatgcataattttcaaggc 5848768  T
Q  301 tttgatcattga 312  Q
    ||||||||||||    
T  5848769 tttgatcattga 5848780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 5847916 - 5848055
Alignment:
Q  1 tatcacttggattttctttatttggattgatatgaagagccacacaatctaatgaccatggatcttcatcaggaaaaggattagatggtatttgattctc 100  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  5847916 tatcacttggattttctttatttctattgatatgaagagccacacactctaatgaccatgtatcttcatcagggaaaggattagatggtatttgattctc 5848015  T
Q  101 aatgtcaaggaaattgggattataatggttattgatcatg 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5848016 aatgtcaaggaaattgggattataatggttattgatcatg 5848055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 5920367 - 5920478
Alignment:
Q  86 tggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttaga 185  Q
    ||||||| |||| | ||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||    
T  5920367 tggtattggattttgaatgtgaaggaaattgccattataatggttattgatcatgtctacctttgtatcaatttggtgaaaattaccttgtagatttgga 5920466  T
Q  186 gatgaggttgga 197  Q
    ||||||||||||    
T  5920467 gatgaggttgga 5920478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 246
Target Start/End: Original strand, 5983554 - 5983711
Alignment:
Q  86 tggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttaga 185  Q
    ||||||| |||| | ||||| | ||||||||| ||||||||||| ||||||   ||||||||||||||||||||| | |||||| |||||||||||| ||    
T  5983554 tggtattggattttgaatgtgagggaaattggcattataatggtcattgat---gtctacctttgtatcaatttgatgaaaattaccttgtagatttgga 5983650  T
Q  186 gatgaggttggaaggtaaaattgatcttgatgatgatgatgataggagtttaggatcacat 246  Q
    |||||||||| | |||| |  | ||||||||| | || ||||| | |||| ||||||||||    
T  5983651 gatgaggttgaatggtataggtaatcttgatggttataatgattgaagttgaggatcacat 5983711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 5947976 - 5948110
Alignment:
Q  109 ggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttagagatgaggttggaaggtaaaattg 208  Q
    ||||||||| ||||||||||| ||||||   ||||||||||||||||||||| | |||||| |||||||||||| |||||||||||| | |||| |  |     
T  5947976 ggaaattggcattataatggtcattgat---gtctacctttgtatcaatttgatgaaaattaccttgtagatttggagatgaggttgaatggtataggta 5948072  T
Q  209 atcttgatgatgatgatgataggagtttaggatcacat 246  Q
    ||||||||| | || ||||| | |||| ||||||||||    
T  5948073 atcttgatggttataatgattgaagttgaggatcacat 5948110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 246
Target Start/End: Original strand, 5959051 - 5959193
Alignment:
Q  101 aatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttagagatgaggttggaagg 200  Q
    ||||| ||||||||||| ||||||||||| ||||||   ||||||||||||||||||||| | |||||| | |||  ||||| |||||||||||| | ||    
T  5959051 aatgtgaaggaaattggcattataatggtcattgat---gtctacctttgtatcaatttgatgaaaattactttgctgatttggagatgaggttgaatgg 5959147  T
Q  201 taaaattgatcttgatgatgatgatgataggagtttaggatcacat 246  Q
    || |  | ||||||||| |||||||||| | |||| ||| ||||||    
T  5959148 tataggtaatcttgatggtgatgatgattgaagttgagggtcacat 5959193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 5958774 - 5958812
Alignment:
Q  268 aatctaggatgctacaagcataatcctcaaggctttgat 306  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5958774 aatctaggatgctacaagcataatcctcaaggctttgat 5958812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 5983316 - 5983361
Alignment:
Q  268 aatctaggatgctacaagcataatcctcaaggctttgatcattgac 313  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||    
T  5983316 aatctaggatgttacaagcataatcctcaaggctttgatgattgac 5983361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 5841585 - 5841651
Alignment:
Q  244 catgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggctttgatcattgac 313  Q
    ||||||||||||||||| ||||||   ||||||||| |||| |||  |||||||||||||||||||||||    
T  5841585 catgttccttggaatcaaatgaat---ctaggatgcaacaatcatggtcctcaaggctttgatcattgac 5841651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 5847739 - 5847805
Alignment:
Q  244 catgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggctttgatcattgac 313  Q
    ||||||||||||||||| ||||||   ||||||||| |||| |||  |||||||||||||||||||||||    
T  5847739 catgttccttggaatcaaatgaat---ctaggatgcaacaatcatggtcctcaaggctttgatcattgac 5847805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 5848295 - 5848361
Alignment:
Q  244 catgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggctttgatcattgac 313  Q
    ||||||||||||||||| ||||||   ||||||||| |||| |||  |||||||||||||||||||||||    
T  5848295 catgttccttggaatcaaatgaat---ctaggatgcaacaatcatggtcctcaaggctttgatcattgac 5848361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 5885904 - 5885970
Alignment:
Q  244 catgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggctttgatcattgac 313  Q
    |||||| |||||||||||||||||   | ||||||| |||| |||  |||||||||||||||||||||||    
T  5885904 catgtttcttggaatcagatgaat---ccaggatgcaacaatcatgttcctcaaggctttgatcattgac 5885970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 311
Target Start/End: Original strand, 5947706 - 5947749
Alignment:
Q  268 aatctaggatgctacaagcataatcctcaaggctttgatcattg 311  Q
    |||||||||||||| |||| ||||||||||||||||||| ||||    
T  5947706 aatctaggatgctagaagcgtaatcctcaaggctttgatgattg 5947749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 313
Target Start/End: Original strand, 5920127 - 5920156
Alignment:
Q  284 agcataatcctcaaggctttgatcattgac 313  Q
    ||||||||||||||||||||||||||||||    
T  5920127 agcataatcctcaaggctttgatcattgac 5920156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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