View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9147_low_25 (Length: 282)
Name: NF9147_low_25
Description: NF9147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9147_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 24 - 269
Target Start/End: Complemental strand, 5841814 - 5841569
Alignment:
| Q |
24 |
attagagtgtgtggctcttcatatcaatagaaataaagaaaatccaagtgatactacccaacatcacaatttagtcaacccaattgcatcaatggcacaa |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5841814 |
attagagtgtgtggctcttcatatcaatagaaataaagaaaatccaagtgatactacccaacatcacaatttagtcaacccaattgcatcaatggcacaa |
5841715 |
T |
|
| Q |
124 |
caatatgatcaatgtcatgatcatcacttgattgaaactgaacccaatattttgcctcaattagtcaatgatcaaagccttgaggaccatgattgttgca |
223 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5841714 |
caatatgatcaatgtcatgatcatcacttggttgaaactgaacccaatattttgcctcaattagtcaatgatcaaagccttgaggaccatgattgttgca |
5841615 |
T |
|
| Q |
224 |
tcctagattcatttgattccaaggaacatgaagctcttagtattat |
269 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5841614 |
tcctagattcatttgattccaaggaacatgaagctcttagtattat |
5841569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 24 - 269
Target Start/End: Complemental strand, 5847968 - 5847723
Alignment:
| Q |
24 |
attagagtgtgtggctcttcatatcaatagaaataaagaaaatccaagtgatactacccaacatcacaatttagtcaacccaattgcatcaatggcacaa |
123 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5847968 |
attagagtgtgtggctcttcatatcaatagaaataaagaaaatccaagtgatactacccaacatcacaatttagtcaacccaattgcatcaatggcacaa |
5847869 |
T |
|
| Q |
124 |
caatatgatcaatgtcatgatcatcacttgattgaaactgaacccaatattttgcctcaattagtcaatgatcaaagccttgaggaccatgattgttgca |
223 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5847868 |
caatatgatcaatgtcatgatcatcacttggttgaaactgaacccaatattttgcctcaattagtcaatgatcaaagccttgaggaccatgattgttgca |
5847769 |
T |
|
| Q |
224 |
tcctagattcatttgattccaaggaacatgaagctcttagtattat |
269 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5847768 |
tcctagattcatttgattccaaggaacatgaagctcttagtattat |
5847723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 24 - 269
Target Start/End: Complemental strand, 5848524 - 5848279
Alignment:
| Q |
24 |
attagagtgtgtggctcttcatatcaatagaaataaagaaaatccaagtgatactacccaacatcacaatttagtcaacccaattgcatcaatggcacaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5848524 |
attagagtgtgtggctcttcatatcaatagaaataaagaaaatccaagtgatactacccaacatcacaatttagtcaacccaattgcatcaatggcacaa |
5848425 |
T |
|
| Q |
124 |
caatatgatcaatgtcatgatcatcacttgattgaaactgaacccaatattttgcctcaattagtcaatgatcaaagccttgaggaccatgattgttgca |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5848424 |
caatatgatcaatgtcatgatcatcacttggttgaaactgaacccaatattttgcctcaattagtcaatgatcaaagccttgaggaccatgattgttgca |
5848325 |
T |
|
| Q |
224 |
tcctagattcatttgattccaaggaacatgaagctcttagtattat |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5848324 |
tcctagattcatttgattccaaggaacatgaagctcttagtattat |
5848279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 24 - 282
Target Start/End: Complemental strand, 5886133 - 5885875
Alignment:
| Q |
24 |
attagagtgtgtggctcttcatatcaatagaaataaagaaaatccaagtgatactacccaacatcacaatttagtcaacccaattgcatcaatggcacaa |
123 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||| || |||| ||||| |
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| T |
5886133 |
attagattgtgtggctcttcatatcaatcgaattaaagaaaatccaagtgataccagccaacatcacaatttagtcaacccaattgtattaatgccacaa |
5886034 |
T |
|
| Q |
124 |
caatatgatcaatgtcatgatcatcacttgattgaaactgaacccaatattttgcctcaattagtcaatgatcaaagccttgaggaccatgattgttgca |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
5886033 |
caatatgatcaatgtcatgatcatcacttggttgaaatggaacccattattgtgcctaaattagtcaatgatcaaagccttgaggaacatgattgttgca |
5885934 |
T |
|
| Q |
224 |
tcctagattcatttgattccaaggaacatgaagctcttagtattatctacccaccagat |
282 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||||||||||||||| || |||| |||| |
|
|
| T |
5885933 |
tcctggattcatctgattccaagaaacatgaagctcttagtattatttatccacaagat |
5885875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 253
Target Start/End: Complemental strand, 5886404 - 5886324
Alignment:
| Q |
176 |
tgcctcaattagtcaatgatcaaagccttgaggaccatgattgttgcatcctag---attcatttgattccaaggaacatg |
253 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||| |||| ||||||||| |||||| ||||||||||||||||| |
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|
| T |
5886404 |
tgcctaaattagtcaatgatcaaagccttgaggattatgcttgtagcatcctagattattcatctgattccaaggaacatg |
5886324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 5958830 - 5958747
Alignment:
| Q |
176 |
tgcctcaattagtcaatgatcaaagccttgaggaccatgattgttgcatcctagattcatttgattccaaggaacatgaagctc |
259 |
Q |
| |
|
||||| |||||| ||| |||||||||||||||| ||| |||| ||||||||||||||| | ||||| | ||||||||||||| |
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| T |
5958830 |
tgcctgaattagaaaatcatcaaagccttgaggattatgcttgtagcatcctagattcatctaattcccaagaacatgaagctc |
5958747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 5983372 - 5983289
Alignment:
| Q |
176 |
tgcctcaattagtcaatgatcaaagccttgaggaccatgattgttgcatcctagattcatttgattccaaggaacatgaagctc |
259 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||| ||| |||| |||||||||||||| | |||| | ||||||||||||| |
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|
| T |
5983372 |
tgcctgaattagtcaatcatcaaagccttgaggattatgcttgtaacatcctagattcatctaattcgcaagaacatgaagctc |
5983289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 251
Target Start/End: Complemental strand, 5842131 - 5842004
Alignment:
| Q |
124 |
caatatgatcaatgtcatgatcatcacttgattgaaactgaacccaatattttgcctcaattagtcaatgatcaaagccttgaggaccatgattgttgca |
223 |
Q |
| |
|
||||||||||||| |||||||||| ||||| ||||| |||| || ||| ||||| ||||| ||||||||||||||||||| | ||| ||| ||| |
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|
| T |
5842131 |
caatatgatcaatatcatgatcataacttggttgaacatgaagcc---attgtgcctaaattactcaatgatcaaagccttgaaaattatgcatgtagca |
5842035 |
T |
|
| Q |
224 |
tcctag---attcatttgattccaaggaaca |
251 |
Q |
| |
|
|||||| |||||| ||||||||||||||| |
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|
| T |
5842034 |
tcctagattattcatctgattccaaggaaca |
5842004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 251
Target Start/End: Complemental strand, 5848841 - 5848714
Alignment:
| Q |
124 |
caatatgatcaatgtcatgatcatcacttgattgaaactgaacccaatattttgcctcaattagtcaatgatcaaagccttgaggaccatgattgttgca |
223 |
Q |
| |
|
||||||||||||| |||||||||| ||||| ||||| |||| || ||| ||||| ||||| ||||||||||||||||||| | ||| ||| ||| |
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|
| T |
5848841 |
caatatgatcaatatcatgatcataacttggttgaacatgaagcc---attgtgcctaaattactcaatgatcaaagccttgaaaattatgcatgtagca |
5848745 |
T |
|
| Q |
224 |
tcctag---attcatttgattccaaggaaca |
251 |
Q |
| |
|
|||||| |||||| ||||||||||||||| |
|
|
| T |
5848744 |
tcctagattattcatctgattccaaggaaca |
5848714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 5920167 - 5920134
Alignment:
| Q |
176 |
tgcctcaattagtcaatgatcaaagccttgagga |
209 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
5920167 |
tgcctaaattagtcaatgatcaaagccttgagga |
5920134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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