View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9147_low_26 (Length: 263)

Name: NF9147_low_26
Description: NF9147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9147_low_26
NF9147_low_26
[»] chr4 (26 HSPs)
chr4 (143-244)||(28808485-28808584)
chr4 (143-213)||(54983218-54983288)
chr4 (93-144)||(38382455-38382506)
chr4 (93-144)||(47181975-47182026)
chr4 (93-144)||(48402083-48402134)
chr4 (92-143)||(336694-336745)
chr4 (93-144)||(34616695-34616746)
chr4 (93-144)||(56363931-56363982)
chr4 (92-142)||(50889961-50890011)
chr4 (92-151)||(6520712-6520771)
chr4 (102-144)||(2575676-2575718)
chr4 (93-146)||(26732359-26732412)
chr4 (101-156)||(515518-515574)
chr4 (93-145)||(51986176-51986228)
chr4 (93-144)||(23369218-23369269)
chr4 (93-144)||(37297182-37297233)
chr4 (93-151)||(15175680-15175738)
chr4 (93-147)||(29175359-29175413)
chr4 (102-144)||(32866413-32866455)
chr4 (102-144)||(39195200-39195242)
chr4 (92-145)||(12595515-12595568)
chr4 (96-145)||(19473841-19473890)
chr4 (93-142)||(53801647-53801696)
chr4 (92-148)||(42491207-42491263)
chr4 (96-144)||(42853714-42853762)
chr4 (102-142)||(43175127-43175167)
[»] chr7 (19 HSPs)
chr7 (143-233)||(27484310-27484400)
chr7 (96-147)||(1284551-1284602)
chr7 (93-144)||(7701678-7701729)
chr7 (93-144)||(46022153-46022204)
chr7 (143-213)||(39522880-39522950)
chr7 (143-234)||(39465419-39465510)
chr7 (93-143)||(3614333-3614383)
chr7 (93-143)||(35072249-35072299)
chr7 (93-143)||(35098590-35098640)
chr7 (143-235)||(24034465-24034556)
chr7 (149-235)||(29447022-29447110)
chr7 (96-140)||(32803826-32803870)
chr7 (143-185)||(22701720-22701762)
chr7 (143-192)||(7809723-7809772)
chr7 (93-142)||(40417908-40417957)
chr7 (92-151)||(20337444-20337503)
chr7 (101-142)||(4292571-4292612)
chr7 (93-142)||(38956506-38956555)
chr7 (93-145)||(3937008-3937060)
[»] chr5 (22 HSPs)
chr5 (143-237)||(35583254-35583347)
chr5 (93-144)||(17626120-17626171)
chr5 (95-145)||(22972253-22972303)
chr5 (143-237)||(25536545-25536637)
chr5 (143-237)||(26620929-26621022)
chr5 (93-146)||(7552851-7552904)
chr5 (93-151)||(26791123-26791181)
chr5 (143-185)||(30841217-30841259)
chr5 (92-145)||(33655298-33655351)
chr5 (93-145)||(18258678-18258730)
chr5 (93-145)||(39591814-39591866)
chr5 (93-145)||(39592206-39592258)
chr5 (102-144)||(1671685-1671727)
chr5 (93-143)||(3565218-3565268)
chr5 (102-140)||(39054730-39054768)
chr5 (103-144)||(1274501-1274542)
chr5 (107-144)||(4088592-4088629)
chr5 (102-143)||(5168326-5168367)
chr5 (96-145)||(13310020-13310069)
chr5 (93-142)||(28306020-28306069)
chr5 (93-142)||(33037654-33037703)
chr5 (103-143)||(35634722-35634762)
[»] chr6 (13 HSPs)
chr6 (93-146)||(26595483-26595536)
chr6 (93-144)||(16199584-16199635)
chr6 (98-139)||(6271486-6271527)
chr6 (143-187)||(4965642-4965686)
chr6 (147-186)||(14912178-14912217)
chr6 (103-142)||(33603168-33603207)
chr6 (109-151)||(17551258-17551300)
chr6 (101-143)||(30457647-30457689)
chr6 (93-143)||(32316815-32316865)
chr6 (93-142)||(552927-552976)
chr6 (93-146)||(15974742-15974795)
chr6 (93-142)||(22079451-22079500)
chr6 (104-144)||(34048624-34048664)
[»] chr3 (29 HSPs)
chr3 (92-145)||(6178310-6178363)
chr3 (93-144)||(21217646-21217697)
chr3 (93-144)||(37056943-37056994)
chr3 (93-141)||(23592592-23592640)
chr3 (93-141)||(23600727-23600775)
chr3 (93-145)||(25641468-25641520)
chr3 (96-144)||(44383326-44383374)
chr3 (143-186)||(13475476-13475519)
chr3 (93-147)||(13348017-13348071)
chr3 (92-143)||(11075263-11075314)
chr3 (93-144)||(35376967-35377018)
chr3 (153-235)||(14770834-14770914)
chr3 (93-146)||(27541386-27541439)
chr3 (107-144)||(33791668-33791705)
chr3 (93-146)||(33939372-33939425)
chr3 (96-141)||(35201323-35201368)
chr3 (103-144)||(52326163-52326204)
chr3 (96-144)||(9753478-9753526)
chr3 (92-140)||(11056823-11056871)
chr3 (96-144)||(43158156-43158204)
chr3 (141-176)||(28310026-28310061)
chr3 (101-146)||(819097-819142)
chr3 (93-142)||(13735864-13735913)
chr3 (143-207)||(21082705-21082769)
chr3 (93-142)||(32924169-32924218)
chr3 (93-142)||(42889119-42889168)
chr3 (95-144)||(51982235-51982284)
chr3 (102-142)||(16969454-16969494)
chr3 (105-145)||(44856099-44856139)
[»] chr2 (25 HSPs)
chr2 (93-144)||(3097747-3097798)
chr2 (93-141)||(41056636-41056684)
chr2 (93-144)||(13333056-13333107)
chr2 (93-144)||(25270468-25270519)
chr2 (92-151)||(37037371-37037430)
chr2 (102-143)||(27490617-27490658)
chr2 (96-144)||(17767930-17767978)
chr2 (143-183)||(31555612-31555652)
chr2 (93-146)||(18254093-18254146)
chr2 (101-142)||(42434261-42434302)
chr2 (103-147)||(21611538-21611582)
chr2 (96-144)||(42340641-42340689)
chr2 (103-142)||(44219367-44219406)
chr2 (102-144)||(1248829-1248871)
chr2 (102-144)||(22888703-22888745)
chr2 (110-143)||(136075-136108)
chr2 (92-145)||(5054057-5054110)
chr2 (93-138)||(19642732-19642777)
chr2 (102-151)||(39147909-39147958)
chr2 (93-146)||(42421782-42421835)
chr2 (92-145)||(44050148-44050201)
chr2 (93-145)||(9760152-9760204)
chr2 (93-145)||(32477466-32477518)
chr2 (95-143)||(32628319-32628367)
chr2 (102-142)||(32701233-32701273)
[»] scaffold1017 (1 HSPs)
scaffold1017 (143-244)||(2289-2387)
[»] chr8 (14 HSPs)
chr8 (143-216)||(9187487-9187561)
chr8 (95-151)||(10839361-10839417)
chr8 (143-182)||(32345233-32345272)
chr8 (143-182)||(32361841-32361880)
chr8 (143-237)||(24411879-24411968)
chr8 (93-143)||(29025394-29025444)
chr8 (93-146)||(37133746-37133799)
chr8 (92-143)||(36969561-36969612)
chr8 (143-186)||(37370074-37370117)
chr8 (93-147)||(3381454-3381508)
chr8 (93-142)||(7598842-7598891)
chr8 (104-144)||(27325903-27325943)
chr8 (101-141)||(32133465-32133505)
chr8 (103-151)||(39856182-39856230)
[»] chr1 (29 HSPs)
chr1 (93-143)||(31827085-31827135)
chr1 (96-144)||(21401535-21401583)
chr1 (96-144)||(46907332-46907380)
chr1 (93-144)||(2269458-2269509)
chr1 (93-144)||(9566846-9566897)
chr1 (93-142)||(19947632-19947681)
chr1 (146-186)||(18115832-18115872)
chr1 (146-186)||(48420420-48420460)
chr1 (95-143)||(49647038-49647086)
chr1 (93-136)||(6809714-6809757)
chr1 (143-186)||(15474919-15474962)
chr1 (143-178)||(18115892-18115927)
chr1 (102-145)||(19055644-19055687)
chr1 (93-144)||(27464943-27464994)
chr1 (93-144)||(31088315-31088366)
chr1 (143-186)||(44066555-44066598)
chr1 (93-144)||(45121367-45121418)
chr1 (102-145)||(50149089-50149132)
chr1 (97-143)||(10338985-10339031)
chr1 (195-237)||(27579334-27579376)
chr1 (102-144)||(30467419-30467461)
chr1 (96-141)||(1777169-1777213)
chr1 (93-142)||(2571770-2571819)
chr1 (93-146)||(18434929-18434982)
chr1 (93-142)||(26469493-26469542)
chr1 (93-145)||(649903-649955)
chr1 (93-145)||(40328654-40328706)
chr1 (93-145)||(45640435-45640487)
chr1 (102-142)||(48470782-48470822)
[»] scaffold0092 (1 HSPs)
scaffold0092 (143-186)||(6594-6637)
[»] scaffold0029 (1 HSPs)
scaffold0029 (147-186)||(72720-72759)
[»] scaffold0184 (1 HSPs)
scaffold0184 (103-143)||(16676-16716)
[»] scaffold0078 (1 HSPs)
scaffold0078 (103-143)||(56128-56168)
[»] scaffold0013 (1 HSPs)
scaffold0013 (153-237)||(101474-101556)
[»] scaffold0199 (1 HSPs)
scaffold0199 (103-145)||(8812-8854)
[»] scaffold0056 (1 HSPs)
scaffold0056 (93-151)||(76498-76556)
[»] scaffold0148 (1 HSPs)
scaffold0148 (117-145)||(20786-20814)


Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 28808485 - 28808584
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaaatttgtataaaacactatatttattttttggctaccacacaaaatatatcgtatagc 242  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||    
T  28808485 tttaaaaaagataatggatgaaagtaaattcaaatattaaaaaatttgtatcaaacac--tatttattttttggctaccacacaaaatatatcgtatagc 28808582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 54983218 - 54983288
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaaatttgtataaaacactatatttattttt 213  Q
    ||||||||||||||||||||||||| ||||||||||||||||||  ||||  |||||| ||||||||||||    
T  54983218 tttaaaaaagataatggatgagagttaattcaaatattaaaaaaaatgtaacaaacacaatatttattttt 54983288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 38382455 - 38382506
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  38382455 tggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 38382506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 47181975 - 47182026
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  47181975 tggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 47182026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 48402134 - 48402083
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  48402134 tggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 48402083  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 336745 - 336694
Alignment:
Q  92 atggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactct 143  Q
    ||||||||||||||||||||||||||||  | ||||||||||||||||||||    
T  336745 atggttgtatcaaaagttgtcataaaaaaagttgttcaaataacacaactct 336694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 34616695 - 34616746
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||| ||||||||||||||| |||| |||||||||||||||||||||||    
T  34616695 tggttgtctcaaaagttgtcatataaatagatgttcaaataacacaactctt 34616746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 56363982 - 56363931
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||| ||||||||||||||  ||||||||||||||||||||||||||||    
T  56363982 tggttgtctcaaaagttgtcatgtaaatggatgttcaaataacacaactctt 56363931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 50890011 - 50889961
Alignment:
Q  92 atggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    |||||||||||||||||||| ||||||| || |||||||||||||||||||    
T  50890011 atggttgtatcaaaagttgttataaaaaaggttgttcaaataacacaactc 50889961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 6520771 - 6520712
Alignment:
Q  92 atggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctttaaaaaa 151  Q
    ||||||||| ||||  |||||||| |||||| ||||||||||||||| ||||||||||||    
T  6520771 atggttgtaccaaatattgtcatacaaatggttgttcaaataacacacctctttaaaaaa 6520712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 2575718 - 2575676
Alignment:
Q  102 caaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  2575718 caaaagttgtcatataaatagatgttcaaataacacaactctt 2575676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 26732359 - 26732412
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttta 146  Q
    |||||||  |||||||||||| | | ||||||||||||||||||||||||||||    
T  26732359 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcttta 26732412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 515574 - 515518
Alignment:
Q  101 tcaaaagttgtcataaaaatggatgttcaaataacacaactctttaaa-aaagataa 156  Q
    ||||||||||||||| ||||  || ||||||||||||||||||||||| ||||||||    
T  515574 tcaaaagttgtcatataaataaatattcaaataacacaactctttaaacaaagataa 515518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 51986176 - 51986228
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    |||||||  |||||||||||| | | |||||||||||||||||||||||||||    
T  51986176 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcttt 51986228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 23369269 - 23369218
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||||||  |||||||||||| | | ||||||||||||||||||||||||||    
T  23369269 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactctt 23369218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 37297182 - 37297233
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||||||  |||||||||||| | | ||||||||||||||||||||||||||    
T  37297182 tggttgtcacaaaagttgtcaaatatatggatgttcaaataacacaactctt 37297233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 15175680 - 15175738
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctttaaaaaa 151  Q
    |||||||| |||||||||||| | | |||||||||||||||| ||||||| ||| ||||    
T  15175680 tggttgtaacaaaagttgtcacatatatggatgttcaaataatacaactccttataaaa 15175738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 29175359 - 29175413
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctttaa 147  Q
    |||||||  |||||||||||| | | ||| |||||||||||||||||||||||||    
T  29175359 tggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactctttaa 29175413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 32866413 - 32866455
Alignment:
Q  102 caaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||||||||| ||||||  |||||||||||||||||||||    
T  32866413 caaaagttgtcattaaaatgattgttcaaataacacaactctt 32866455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 39195200 - 39195242
Alignment:
Q  102 caaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||| ||||||||| |||| |||||||||||||||||||||||    
T  39195200 caaatgttgtcatataaatagatgttcaaataacacaactctt 39195242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 12595568 - 12595515
Alignment:
Q  92 atggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    ||||||||  ||||| ||||||| ||||||| ||||||||||||||| ||||||    
T  12595568 atggttgtcccaaaaattgtcatcaaaatggttgttcaaataacacatctcttt 12595515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 19473890 - 19473841
Alignment:
Q  96 ttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    |||| ||||||||||||||| ||||| || |||||||||||||| |||||    
T  19473890 ttgtctcaaaagttgtcatataaatgcatcttcaaataacacaaatcttt 19473841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 53801696 - 53801647
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    |||||||  |||||||||||| | | ||||||||||||||||||||||||    
T  53801696 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 53801647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 42491207 - 42491263
Alignment:
Q  92 atggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctttaaa 148  Q
    ||||||||  ||||||||||||   |||||| ||||||||||||||||||| |||||    
T  42491207 atggttgtcccaaaagttgtcaatcaaatggttgttcaaataacacaactccttaaa 42491263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 42853714 - 42853762
Alignment:
Q  96 ttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||| |||||| ||||||   ||||||||||||||||||||||||||||    
T  42853714 ttgtctcaaaaattgtcactcaaatggatgttcaaataacacaactctt 42853762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 43175127 - 43175167
Alignment:
Q  102 caaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    |||||||||||| | | ||||||||||||||||||||||||    
T  43175127 caaaagttgtcacatatatggatgttcaaataacacaactc 43175167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 27484400 - 27484310
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaaatttgtataaaacactatatttattttttggctaccacacaaaatata 233  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  |||   |||||| |||||||||||||   | ||||||||||||||    
T  27484400 tttaaaaaagataatggatgaaagtaaattcaaatattaaaaaaagtgtcacaaacacaatatttatttttttattgccacacaaaatata 27484310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 1284551 - 1284602
Alignment:
Q  96 ttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctttaa 147  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  1284551 ttgtatcaaaagttatcataaaaatggttgttcaaataacacaactctttaa 1284602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 7701678 - 7701729
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  7701678 tggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 7701729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 46022204 - 46022153
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  46022204 tggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 46022153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 39522880 - 39522950
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaaatttgtataaaacactatatttattttt 213  Q
    ||||||||||| ||||||||| ||| |||||||||||||||||| |||||  |||||| ||||||||||||    
T  39522880 tttaaaaaagacaatggatgaaagtgaattcaaatattaaaaaaattgtaacaaacacaatatttattttt 39522950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 234
Target Start/End: Complemental strand, 39465510 - 39465419
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaaatttgtataaaacactatatttattttttggctaccacacaaaatatat 234  Q
    |||||||||||||||| | |||||| ||||||||||||||||||  || |   ||||| ||||||||||||||  ||||||| |||||||||    
T  39465510 tttaaaaaagataatgtacgagagtgaattcaaatattaaaaaaggtgcaactaacacaatatttattttttgattaccacataaaatatat 39465419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 3614383 - 3614333
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactct 143  Q
    ||||||| ||||||||||||||| |||||||||||||||||||| ||||||    
T  3614383 tggttgtttcaaaagttgtcatataaatggatgttcaaataacataactct 3614333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 35072299 - 35072249
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactct 143  Q
    ||||||| ||||||||||||||| ||||||||||||| |||||||||||||    
T  35072299 tggttgtttcaaaagttgtcatataaatggatgttcagataacacaactct 35072249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 35098640 - 35098590
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactct 143  Q
    ||||||| ||||||||||||||| |||||||| ||||||||||||||||||    
T  35098640 tggttgtttcaaaagttgtcatataaatggatattcaaataacacaactct 35098590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 24034556 - 24034465
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaaatttgtataaaacactatatttattttttggctaccacacaaaatatatc 235  Q
    ||||||||| |||||| |||||||  ||||||||||||||||||  ||||  |||||| |||| |||||||||| |||||  |||||||||||    
T  24034556 tttaaaaaatataatgaatgagagcgaattcaaatattaaaaaa-gtgtaacaaacacaatatatattttttggttaccatgcaaaatatatc 24034465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 29447022 - 29447110
Alignment:
Q  149 aaagataatggatgagagtaaattcaaatattaaaaaatttgt-ataaaacactatatttatt-ttttggctaccacacaaaatatatc 235  Q
    ||||||||||||| ||| | ||||||||||||||||||  ||| | ||||||| ||||||||| |||||| ||||||| ||||||||||    
T  29447022 aaagataatggataagaatgaattcaaatattaaaaaaactgtaaaaaaacacaatatttattcttttggttaccacataaaatatatc 29447110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 32803826 - 32803870
Alignment:
Q  96 ttgtatcaaaagttgtcataaaaatggatgttcaaataacacaac 140  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||    
T  32803826 ttgtttcaaaagttgtcatataaatggatgttcaaataacacaac 32803870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 22701720 - 22701762
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaa 185  Q
    ||||||||||||||||||||||||| |||||||||||| ||||    
T  22701720 tttaaaaaagataatggatgagagtgaattcaaatatttaaaa 22701762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 7809723 - 7809772
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaaatttgta 192  Q
    |||||||||||||| |||||||| | |||| |||||||||||||||||||    
T  7809723 tttaaaaaagataaaggatgagactgaatttaaatattaaaaaatttgta 7809772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 40417908 - 40417957
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    ||||||| |||||||||||| || |||| |||||||||||||||||||||    
T  40417908 tggttgtctcaaaagttgtcgtataaatagatgttcaaataacacaactc 40417957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 20337444 - 20337503
Alignment:
Q  92 atggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctttaaaaaa 151  Q
    |||||| | ||| ||||||||||| |||| | ||||||||||||||| ||||||||||||    
T  20337444 atggttatctcataagttgtcatacaaatagttgttcaaataacacacctctttaaaaaa 20337503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 4292571 - 4292612
Alignment:
Q  101 tcaaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    |||||||||||||| |||||||||||| ||||||||| ||||    
T  4292571 tcaaaagttgtcatgaaaatggatgtttaaataacactactc 4292612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 38956555 - 38956506
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    |||||||  |||||||||||| | | ||||||||||||||||||||||||    
T  38956555 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 38956506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 3937060 - 3937008
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    |||||||  |||||||||||| |   |||||||||||||||||||||||||||    
T  3937060 tggttgtcacaaaagttgtcacatgtatggatgttcaaataacacaactcttt 3937008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 35583347 - 35583254
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaaatttgtataaaacactatatttattttttggctaccacacaaaatatatcgt 237  Q
    ||||||||||||||||||||||| | ||||||||||||||||||  ||||  ||| || || |||||||||||| ||| ||||||||||||||||    
T  35583347 tttaaaaaagataatggatgagaatgaattcaaatattaaaaaa-gtgtaacaaagacaatgtttattttttggttacaacacaaaatatatcgt 35583254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 17626120 - 17626171
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  17626120 tggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 17626171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 22972253 - 22972303
Alignment:
Q  95 gttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    ||||| ||||||||||| ||| |||||||||||||||||||||||||||||    
T  22972253 gttgtctcaaaagttgttatataaatggatgttcaaataacacaactcttt 22972303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 25536545 - 25536637
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaaatttgtataaaacactatatttattttttggctaccacacaaaatatatcgt 237  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||  ||||  |||||  |||||||||| |||| | |||||| |||||||||||    
T  25536545 tttaaaaaagataatagatgagagtgaattcaaatattaaaaaa-atgtaacaaacataatatttatttcttggtttccacac-aaatatatcgt 25536637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 26621022 - 26620929
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaaatttgtataaaacactatatttattttttggctaccacacaaaatatatcgt 237  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||   |||  |||||  |||||||||| |||| ||||| ||||||||||||||    
T  26621022 tttaaaaaagataatggataagagagaattcaaatattaaaaaaaa-gtaacaaacaagatatttatttattggttaccatacaaaatatatcgt 26620929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 7552904 - 7552851
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttta 146  Q
    |||||||  |||||||||||||  ||||||||||||||||||||||||||||||    
T  7552904 tggttgtcacaaaagttgtcatctaaatggatgttcaaataacacaactcttta 7552851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 26791181 - 26791123
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctttaaaaaa 151  Q
    |||||||  |||||||||||| | | |||||||||||||||||||||||||| ||||||    
T  26791181 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcttaaaaaaa 26791123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 30841259 - 30841217
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaa 185  Q
    ||||||||||||||||||||| ||| |||||||||||||||||    
T  30841259 tttaaaaaagataatggatgacagtgaattcaaatattaaaaa 30841217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 33655351 - 33655298
Alignment:
Q  92 atggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    ||||||||| |||||||| |||||||||| | | ||||||||||||||||||||    
T  33655351 atggttgtaccaaaagttatcataaaaatagttattcaaataacacaactcttt 33655298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 18258730 - 18258678
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    |||||||  |||||||||||| | | |||||||||||||||||||||||||||    
T  18258730 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcttt 18258678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 39591814 - 39591866
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    |||||||  |||| ||||||||| |||| ||||||||||||||||||||||||    
T  39591814 tggttgtcacaaaggttgtcatataaatagatgttcaaataacacaactcttt 39591866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 39592206 - 39592258
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    |||||||  |||| ||||||||| |||| ||||||||||||||||||||||||    
T  39592206 tggttgtcacaaaggttgtcatataaatagatgttcaaataacacaactcttt 39592258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 1671685 - 1671727
Alignment:
Q  102 caaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||||||||||| | | ||||||||||||||||||||||||||    
T  1671685 caaaagttgtcacatatatggatgttcaaataacacaactctt 1671727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 3565218 - 3565268
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactct 143  Q
    ||||||| |||||||||||||   || ||||||||||||||||||||||||    
T  3565218 tggttgtctcaaaagttgtcactcaagtggatgttcaaataacacaactct 3565268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 39054730 - 39054768
Alignment:
Q  102 caaaagttgtcataaaaatggatgttcaaataacacaac 140  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  39054730 caaaagttgtcatctaaatggatgttcaaataacacaac 39054768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 1274501 - 1274542
Alignment:
Q  103 aaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||||||| | | ||||||||||||||||||||||||||    
T  1274501 aaaagttgtcacatatatggatgttcaaataacacaactctt 1274542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 4088592 - 4088629
Alignment:
Q  107 gttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  4088592 gttgtcaaaaaaatagatgttcaaataacacaactctt 4088629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 5168326 - 5168367
Alignment:
Q  102 caaaagttgtcataaaaatggatgttcaaataacacaactct 143  Q
    |||||||||||||| | ||| |||||||||||||||||||||    
T  5168326 caaaagttgtcatatatatgaatgttcaaataacacaactct 5168367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 13310020 - 13310069
Alignment:
Q  96 ttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    |||| |||||| |||||||  ||||||||||||||||||||||| |||||    
T  13310020 ttgtctcaaaaattgtcatctaaatggatgttcaaataacacaattcttt 13310069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 28306069 - 28306020
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    |||||||  |||||||||||| | | ||||||||||||||||||||||||    
T  28306069 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 28306020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 33037654 - 33037703
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    |||||||  |||||||||||| | | ||||||||||||||||||||||||    
T  33037654 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 33037703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 35634762 - 35634722
Alignment:
Q  103 aaaagttgtcataaaaatggatgttcaaataacacaactct 143  Q
    ||||||||||| | | |||||||||||||||||||||||||    
T  35634762 aaaagttgtcacatatatggatgttcaaataacacaactct 35634722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 26595483 - 26595536
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttta 146  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  26595483 tggttgtttcaaaagttgtcatataaatggatgttcaaataacacaactcttta 26595536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 16199584 - 16199635
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  16199584 tggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 16199635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 6271486 - 6271527
Alignment:
Q  98 gtatcaaaagttgtcataaaaatggatgttcaaataacacaa 139  Q
    ||||||||||||||||| ||||||| ||||||||||||||||    
T  6271486 gtatcaaaagttgtcattaaaatggttgttcaaataacacaa 6271527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 4965686 - 4965642
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaaat 187  Q
    |||||||||||||||||||| |||| |||| ||||||||||||||    
T  4965686 tttaaaaaagataatggatgtgagtgaatttaaatattaaaaaat 4965642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 14912217 - 14912178
Alignment:
Q  147 aaaaagataatggatgagagtaaattcaaatattaaaaaa 186  Q
    ||||||| ||||||||||||| ||||||||||||||||||    
T  14912217 aaaaagaaaatggatgagagtgaattcaaatattaaaaaa 14912178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 33603207 - 33603168
Alignment:
Q  103 aaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  33603207 aaaagttgtcatataaatggatgttcaaaaaacacaactc 33603168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 17551300 - 17551258
Alignment:
Q  109 tgtcataaaaatggatgttcaaataacacaactctttaaaaaa 151  Q
    |||||||||||| ||||||||||||||||||||| | ||||||    
T  17551300 tgtcataaaaatagatgttcaaataacacaactcataaaaaaa 17551258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 30457647 - 30457689
Alignment:
Q  101 tcaaaagttgtcataaaaatggatgttcaaataacacaactct 143  Q
    ||||||||||||||| ||||||||||| || ||||||||||||    
T  30457647 tcaaaagttgtcatataaatggatgttgaattaacacaactct 30457689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 32316865 - 32316815
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactct 143  Q
    |||||||  |||||||||||| | | |||||||||||||||||||||||||    
T  32316865 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactct 32316815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 552927 - 552976
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    |||||||  |||||||||||| | | ||||||||||||||||||||||||    
T  552927 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 552976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 15974742 - 15974795
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttta 146  Q
    |||||||  |||||||||| | | | ||||||||||||||||||||||||||||    
T  15974742 tggttgtcacaaaagttgttacatatatggatgttcaaataacacaactcttta 15974795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 22079500 - 22079451
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    |||||||  ||||||| |||||  ||||||||||||||||||||||||||    
T  22079500 tggttgtcacaaaagtggtcatctaaatggatgttcaaataacacaactc 22079451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 34048664 - 34048624
Alignment:
Q  104 aaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||||||| || ||||||| |||||||||||||||||||||    
T  34048664 aaagttgtaattaaaatggttgttcaaataacacaactctt 34048624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 6178363 - 6178310
Alignment:
Q  92 atggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  6178363 atggttgtatcgaaagttgtcataaaaatggttgttcaaataacacaactcttt 6178310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 21217646 - 21217697
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  21217646 tggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 21217697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 37056994 - 37056943
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  37056994 tggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 37056943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 23592592 - 23592640
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaact 141  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  23592592 tggttgtctcaaaagttgtcatataaatggatgttcaaataacacaact 23592640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 23600727 - 23600775
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaact 141  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  23600727 tggttgtctcaaaagttgtcatataaatggatgttcaaataacacaact 23600775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 25641520 - 25641468
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    ||||||| ||||||||||||||| |||||||||||||||||| ||||||||||    
T  25641520 tggttgtctcaaaagttgtcatataaatggatgttcaaataatacaactcttt 25641468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 44383326 - 44383374
Alignment:
Q  96 ttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  44383326 ttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 44383374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 13475519 - 13475476
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaaa 186  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  13475519 tttaaaaaagataatgaatgagagtaaattcaaatattaaaaaa 13475476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 13348071 - 13348017
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctttaa 147  Q
    |||||||  |||||||||||||| |||||||||||||||||||| ||||||||||    
T  13348071 tggttgtcccaaaagttgtcatataaatggatgttcaaataacataactctttaa 13348017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 11075314 - 11075263
Alignment:
Q  92 atggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactct 143  Q
    |||||||| ||||||||||||||| |||||| ||||||||||||| ||||||    
T  11075314 atggttgtctcaaaagttgtcatacaaatggttgttcaaataacataactct 11075263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 35377018 - 35376967
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||||||  |||||||||||||  ||||||||||||||||||||||||||||    
T  35377018 tggttgtcacaaaagttgtcatctaaatggatgttcaaataacacaactctt 35376967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 14770914 - 14770834
Alignment:
Q  153 ataatggatgagagtaaattcaaatattaaaaaatttgtataaaacactatatttattttttggctaccacacaaaatatatc 235  Q
    ||||||||||||||  ||||||||||||||||||  ||||  |||||| | |||||||||||| | |||||||||||||||||    
T  14770914 ataatggatgagagcgaattcaaatattaaaaaa-gtgtaacaaacacaaaatttattttttgtc-accacacaaaatatatc 14770834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 27541439 - 27541386
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttta 146  Q
    |||||||  |||||||||||| | | ||||||||||||||||||||||||||||    
T  27541439 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcttta 27541386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 33791705 - 33791668
Alignment:
Q  107 gttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  33791705 gttgtcatataaatggatgttcaaataacacaactctt 33791668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 33939372 - 33939425
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttta 146  Q
    |||||||  |||||||||||| | | ||||||||||||||||||||||||||||    
T  33939372 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcttta 33939425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 35201368 - 35201323
Alignment:
Q  96 ttgtatcaaaagttgtcataaaaatggatgttcaaataacacaact 141  Q
    |||| ||||||||||||||  |||||||||||||||||||||||||    
T  35201368 ttgtctcaaaagttgtcatttaaatggatgttcaaataacacaact 35201323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 52326163 - 52326204
Alignment:
Q  103 aaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  52326163 aaaagttgtcatatatatggatgttcaaataacacaactctt 52326204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 9753478 - 9753526
Alignment:
Q  96 ttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||||||||||||||| ||| ||||| ||||||||| ||||||||||||    
T  9753478 ttgtatcaaaagttgttatacaaatgaatgttcaaacaacacaactctt 9753526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 11056871 - 11056823
Alignment:
Q  92 atggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaac 140  Q
    |||||||| ||||||||||| ||| |||||| |||||||||||||||||    
T  11056871 atggttgtctcaaaagttgttatacaaatggttgttcaaataacacaac 11056823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 43158204 - 43158156
Alignment:
Q  96 ttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||| ||||| || |||||||||||| |||||||||||||||||||||    
T  43158204 ttgtaccaaaatttatcataaaaatggttgttcaaataacacaactctt 43158156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 176
Target Start/End: Complemental strand, 28310061 - 28310026
Alignment:
Q  141 tctttaaaaaagataatggatgagagtaaattcaaa 176  Q
    ||||||||||||||||| ||||||||||||||||||    
T  28310061 tctttaaaaaagataattgatgagagtaaattcaaa 28310026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 819142 - 819097
Alignment:
Q  101 tcaaaagttgtcataaaaatggatgttcaaataacacaactcttta 146  Q
    |||||||||||||| ||||||| |||| |||||||||| |||||||    
T  819142 tcaaaagttgtcatcaaaatggttgtttaaataacacatctcttta 819097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 13735864 - 13735913
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    |||||||  |||||||||||| | | ||||||||||||||||||||||||    
T  13735864 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 13735913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 21082705 - 21082769
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaata-ttaaaaaatttgtataaaacactatattt 207  Q
    ||||||||||||||||||||| ||| |||||||||| |||||||| |||||  |||||| ||||||    
T  21082705 tttaaaaaagataatggatga-agtgaattcaaatatttaaaaaaattgtaacaaacacaatattt 21082769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 32924218 - 32924169
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    |||||||  |||||||||||| | | ||||||||||||||||||||||||    
T  32924218 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 32924169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 42889119 - 42889168
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    ||||| ||||||||||||||||  |||| |||||| ||||||||||||||    
T  42889119 tggttatatcaaaagttgtcatctaaatagatgtttaaataacacaactc 42889168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 51982235 - 51982284
Alignment:
Q  95 gttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||| |||||| |||| ||| |||||||| |||||||||||||||||||    
T  51982235 gttgtctcaaaaattgttatataaatggattttcaaataacacaactctt 51982284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 16969494 - 16969454
Alignment:
Q  102 caaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    |||||||||||| | | ||||||||||||||||||||||||    
T  16969494 caaaagttgtcacatatatggatgttcaaataacacaactc 16969454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 44856099 - 44856139
Alignment:
Q  105 aagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    ||||||||| | | |||||||||||||||||||||||||||    
T  44856099 aagttgtcacatatatggatgttcaaataacacaactcttt 44856139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 3097798 - 3097747
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  3097798 tggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 3097747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 41056684 - 41056636
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaact 141  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  41056684 tggttgtctcaaaagttgtcatataaatggatgttcaaataacacaact 41056636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 13333107 - 13333056
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||| ||||||||||||||| |||| |||||||||||||||||||||||    
T  13333107 tggttgtctcaaaagttgtcatataaatcgatgttcaaataacacaactctt 13333056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 25270519 - 25270468
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||| || |||||||||||| ||||||||||||||||||||||||||||    
T  25270519 tggttgtctcgaaagttgtcatataaatggatgttcaaataacacaactctt 25270468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 37037371 - 37037430
Alignment:
Q  92 atggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctttaaaaaa 151  Q
    ||||||||| |||||||||| |||||| ||| |||||||||||||||||||||| |||||    
T  37037371 atggttgtaccaaaagttgttataaaattggttgttcaaataacacaactcttttaaaaa 37037430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 27490658 - 27490617
Alignment:
Q  102 caaaagttgtcataaaaatggatgttcaaataacacaactct 143  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  27490658 caaaagttgtcatcaaaatggatgttcaaataacacaactct 27490617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 17767978 - 17767930
Alignment:
Q  96 ttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||| |||||||||||| |||||||| ||||||||||||||||||||||    
T  17767978 ttgtctcaaaagttgtcgtaaaaatgaatgttcaaataacacaactctt 17767930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 31555652 - 31555612
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaa 183  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  31555652 tttaaaaaagataatggatgagagtgaattcaaatattaaa 31555612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 18254146 - 18254093
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttta 146  Q
    |||||||  |||||||||||| | | ||||||||||||||||||||||||||||    
T  18254146 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcttta 18254093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 42434261 - 42434302
Alignment:
Q  101 tcaaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  42434261 tcaaaagttgtcatataaatagatgttcaaataacacaactc 42434302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 21611582 - 21611538
Alignment:
Q  103 aaaagttgtcataaaaatggatgttcaaataacacaactctttaa 147  Q
    ||||||||||| | | |||||||||||||||||||||||||||||    
T  21611582 aaaagttgtcacatatatggatgttcaaataacacaactctttaa 21611538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 42340689 - 42340641
Alignment:
Q  96 ttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||| |||||||||||| || |||| |||||||||||||||||||||||    
T  42340689 ttgtttcaaaagttgtcctataaatagatgttcaaataacacaactctt 42340641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 44219367 - 44219406
Alignment:
Q  103 aaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  44219367 aaaagttgtcatataaatggatgttcaaatgacacaactc 44219406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 1248829 - 1248871
Alignment:
Q  102 caaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||||||||||| | | ||||||||||||||||||||||||||    
T  1248829 caaaagttgtcacatatatggatgttcaaataacacaactctt 1248871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 22888745 - 22888703
Alignment:
Q  102 caaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||||||||||| | | ||||||||||||||||||||||||||    
T  22888745 caaaagttgtcacatatatggatgttcaaataacacaactctt 22888703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 143
Target Start/End: Original strand, 136075 - 136108
Alignment:
Q  110 gtcataaaaatggatgttcaaataacacaactct 143  Q
    |||||| |||||||||||||||||||||||||||    
T  136075 gtcatataaatggatgttcaaataacacaactct 136108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 5054110 - 5054057
Alignment:
Q  92 atggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    |||||||| ||||||||||||||| |||| | | || |||||||||||||||||    
T  5054110 atggttgtctcaaaagttgtcatataaatagttttttaaataacacaactcttt 5054057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 19642732 - 19642777
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacaca 138  Q
    ||||||| ||||||||| ||||| ||||||||||| ||||||||||    
T  19642732 tggttgtctcaaaagttctcatataaatggatgtttaaataacaca 19642777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 39147909 - 39147958
Alignment:
Q  102 caaaagttgtcataaaaatggatgttcaaataacacaactctttaaaaaa 151  Q
    ||||||||||||| ||||||| ||||||||||||||| ||| | ||||||    
T  39147909 caaaagttgtcattaaaatggttgttcaaataacacatctcataaaaaaa 39147958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 42421835 - 42421782
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttta 146  Q
    |||||||  |||||||||||| | | ||| ||||||||||||||||||||||||    
T  42421835 tggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactcttta 42421782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 44050148 - 44050201
Alignment:
Q  92 atggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    |||||||| ||||||||||||  | |||||| ||||||||||||||| ||||||    
T  44050148 atggttgtctcaaaagttgtcgcacaaatggttgttcaaataacacacctcttt 44050201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 9760152 - 9760204
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    |||||||  |||||||||||| | | || ||||||||||||||||||||||||    
T  9760152 tggttgtcacaaaagttgtcacatatatagatgttcaaataacacaactcttt 9760204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 32477466 - 32477518
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    |||||||  |||||||||||| | | ||| |||||||||||||||||||||||    
T  32477466 tggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactcttt 32477518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 32628319 - 32628367
Alignment:
Q  95 gttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactct 143  Q
    ||||| ||||||||| |||| ||||||| ||||||||||||| ||||||    
T  32628319 gttgtctcaaaagttatcattaaaatggttgttcaaataacaaaactct 32628367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 32701233 - 32701273
Alignment:
Q  102 caaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    |||||||| ||||| |||||| |||||||||||||||||||    
T  32701233 caaaagttatcatataaatggttgttcaaataacacaactc 32701273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1017 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 2387 - 2289
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaaatttgtataaaacactatatttattttttggctaccacacaaaatatatcgtatagc 242  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||| |||||  |||||  ||||||| ||||||| |||| || |||||||||| ||||||    
T  2387 tttaaaaaagataatagatgaaagtgaattcaaatattaaaaaaattgtaacaaaca--atattta-tttttggttaccgcataaaatatatcatatagc 2291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 9187487 - 9187561
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatatt-aaaaaatttgtataaaacactatatttattttttgg 216  Q
    |||||||||||||||| ||||| ||||||||||||||| ||||||  ||||  |||||| |||||||||||||||    
T  9187487 tttaaaaaagataatgaatgagtgtaaattcaaatattaaaaaaaaatgtaacaaacacaatatttattttttgg 9187561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 10839417 - 10839361
Alignment:
Q  95 gttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctttaaaaaa 151  Q
    ||||| |||||| || ||||||||||||||||||||||||||| |||||| ||||||    
T  10839417 gttgtctcaaaaattatcataaaaatggatgttcaaataacactactcttaaaaaaa 10839361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 32345272 - 32345233
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaa 182  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  32345272 tttaaaaaagataatggatgagagtgaattcaaatattaa 32345233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 32361880 - 32361841
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaa 182  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  32361880 tttaaaaaagataatggatgagagtgaattcaaatattaa 32361841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 24411968 - 24411879
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaaatttgtataaaacactatatttattttttggctaccacacaaaatatatcgt 237  Q
    ||||||||||||||||||| | ||| ||||||||||||||||||  ||||  |||||| ||     |||||| | ||||||||||||||||||||    
T  24411968 tttaaaaaagataatggatcaaagttaattcaaatattaaaaaaaatgtaacaaacacaat-----tttttttgttaccacacaaaatatatcgt 24411879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 29025394 - 29025444
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactct 143  Q
    |||||||  |||||||||||||| ||||||||||| |||||||||||||||    
T  29025394 tggttgtcccaaaagttgtcatataaatggatgtttaaataacacaactct 29025444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 37133799 - 37133746
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttta 146  Q
    |||||||  |||||||||||||  ||||||||||| ||||||||||||||||||    
T  37133799 tggttgtcacaaaagttgtcatctaaatggatgttaaaataacacaactcttta 37133746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 36969612 - 36969561
Alignment:
Q  92 atggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactct 143  Q
    ||||||||  || ||||||||| | |||||||||||||||||||||||||||    
T  36969612 atggttgtcgcataagttgtcaaacaaatggatgttcaaataacacaactct 36969561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 37370074 - 37370117
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaaa 186  Q
    ||||||||||||||||||||||||  |||||||| |||||||||    
T  37370074 tttaaaaaagataatggatgagagagaattcaaaaattaaaaaa 37370117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 3381508 - 3381454
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctttaa 147  Q
    |||||||||||| |||||||||| |||||||||||| ||||| | ||||| ||||    
T  3381508 tggttgtatcaagagttgtcatataaatggatgttctaataatataactcattaa 3381454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 7598842 - 7598891
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    ||||||| ||||||||| ||||| || || ||||||||||||||||||||    
T  7598842 tggttgtctcaaaagttttcatataattgaatgttcaaataacacaactc 7598891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 27325903 - 27325943
Alignment:
Q  104 aaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||||||||| | | ||||||||||||||||||||||||||    
T  27325903 aaagttgtcacatatatggatgttcaaataacacaactctt 27325943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 32133465 - 32133505
Alignment:
Q  101 tcaaaagttgtcataaaaatggatgttcaaataacacaact 141  Q
    |||||| || ||||| |||||||||||||||||||||||||    
T  32133465 tcaaaatttatcatataaatggatgttcaaataacacaact 32133505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 39856182 - 39856230
Alignment:
Q  103 aaaagttgtcataaaaatggatgttcaaataacacaactctttaaaaaa 151  Q
    ||||||| |||| ||||| | ||||||||||||||||||||| ||||||    
T  39856182 aaaagttatcattaaaatagttgttcaaataacacaactcttgaaaaaa 39856230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 31827085 - 31827135
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactct 143  Q
    ||||||||||||||||||||||  |||| ||||||||||||||||||||||    
T  31827085 tggttgtatcaaaagttgtcatctaaatagatgttcaaataacacaactct 31827135  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 21401535 - 21401583
Alignment:
Q  96 ttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||||||    
T  21401535 ttgtttcaaaagttgtcacataaatggatgttcaaataacacaactctt 21401583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 46907332 - 46907380
Alignment:
Q  96 ttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||| |||||||||||| || ||||||||||||||||||||||||||||    
T  46907332 ttgtctcaaaagttgtcgtataaatggatgttcaaataacacaactctt 46907380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 2269509 - 2269458
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||||||||||||||||||| || || || |||||||||||||||||||    
T  2269509 tggttgtatcaaaagttgtcatataattgaatattcaaataacacaactctt 2269458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 9566897 - 9566846
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    ||||||| ||||||||||||||| || || ||||||||||||||||||||||    
T  9566897 tggttgtctcaaaagttgtcatataattgaatgttcaaataacacaactctt 9566846  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 19947681 - 19947632
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    ||||||| ||||||||||||||| ||||  ||||||||||||||||||||    
T  19947681 tggttgtctcaaaagttgtcatataaataaatgttcaaataacacaactc 19947632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 18115832 - 18115872
Alignment:
Q  146 aaaaaagataatggatgagagtaaattcaaatattaaaaaa 186  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  18115832 aaaaaagataatggatgagagtgaatttaaatattaaaaaa 18115872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 48420420 - 48420460
Alignment:
Q  146 aaaaaagataatggatgagagtaaattcaaatattaaaaaa 186  Q
    ||||||||||||||||||||| ||| |||||||||||||||    
T  48420420 aaaaaagataatggatgagagcaaagtcaaatattaaaaaa 48420460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 49647086 - 49647038
Alignment:
Q  95 gttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactct 143  Q
    ||||| ||||||||||||||| ||||| |||||||||||||| ||||||    
T  49647086 gttgtttcaaaagttgtcatataaatgaatgttcaaataacataactct 49647038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 6809714 - 6809757
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataaca 136  Q
    |||||||  |||||||||||||| ||||||||||||||||||||    
T  6809714 tggttgtcccaaaagttgtcatataaatggatgttcaaataaca 6809757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 15474919 - 15474962
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaaa 186  Q
    |||||||| ||||| |||||||||| ||||||||||||||||||    
T  15474919 tttaaaaatgataacggatgagagtgaattcaaatattaaaaaa 15474962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 178
Target Start/End: Original strand, 18115892 - 18115927
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaata 178  Q
    ||||||||||||||||||||||||| ||||||||||    
T  18115892 tttaaaaaagataatggatgagagtgaattcaaata 18115927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 19055687 - 19055644
Alignment:
Q  102 caaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    |||||||||||| | | |||||||||||||||||||||||||||    
T  19055687 caaaagttgtcacatatatggatgttcaaataacacaactcttt 19055644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 27464994 - 27464943
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||||||  |||||||||||| | | ||||||||||||||||||||||||||    
T  27464994 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactctt 27464943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 31088315 - 31088366
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||||||  |||||||||||| | | ||||||||||||||||||||||||||    
T  31088315 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactctt 31088366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 44066598 - 44066555
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaaa 186  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||    
T  44066598 tttaaaaaagataacagatgagagtgaattcaaatattaaaaaa 44066555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 45121418 - 45121367
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||||||  |||||||||||| | | ||||||||||||||||||||||||||    
T  45121418 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactctt 45121367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 50149089 - 50149132
Alignment:
Q  102 caaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    |||||||||||||| |||  ||||||||||||||||||||||||    
T  50149089 caaaagttgtcatataaaatgatgttcaaataacacaactcttt 50149132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 10339031 - 10338985
Alignment:
Q  97 tgtatcaaaagttgtcataaaaatggatgttcaaataacacaactct 143  Q
    |||| ||||| || |||||||||||| ||||||||||||||||||||    
T  10339031 tgtaccaaaaattatcataaaaatggttgttcaaataacacaactct 10338985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 27579376 - 27579334
Alignment:
Q  195 aaacactatatttattttttggctaccacacaaaatatatcgt 237  Q
    |||||| ||||||||||||| | ||||||||||||||||||||    
T  27579376 aaacacaatatttattttttagttaccacacaaaatatatcgt 27579334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 30467461 - 30467419
Alignment:
Q  102 caaaagttgtcataaaaatggatgttcaaataacacaactctt 144  Q
    |||||||||||||| || | |||||||||||||||||||||||    
T  30467461 caaaagttgtcatataattagatgttcaaataacacaactctt 30467419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 1777169 - 1777213
Alignment:
Q  96 ttgtatcaaaagttgtcataaaaatggatgttcaaataacacaact 141  Q
    |||||||||||||| |||||||| ||||||||||||||| ||||||    
T  1777169 ttgtatcaaaagttatcataaaa-tggatgttcaaataatacaact 1777213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 2571770 - 2571819
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    |||||||  ||||||||||||||   ||||||||||||||||||||||||    
T  2571770 tggttgtcacaaaagttgtcatatgcatggatgttcaaataacacaactc 2571819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 18434929 - 18434982
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttta 146  Q
    |||||||  |||||||||||||  |||| ||| |||||||||||||||||||||    
T  18434929 tggttgtcacaaaagttgtcatctaaatagattttcaaataacacaactcttta 18434982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 26469493 - 26469542
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    |||||||  |||||||||||| | | ||||||||||||||||||||||||    
T  26469493 tggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 26469542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 649903 - 649955
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    |||||||  |||||||||||| | |  ||||||||||||||||||||||||||    
T  649903 tggttgtcacaaaagttgtcacatatgtggatgttcaaataacacaactcttt 649955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 40328706 - 40328654
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    ||||| ||||||||||| ||||  |||| ||||||||||||||| ||||||||    
T  40328706 tggttatatcaaaagttatcatctaaatagatgttcaaataacataactcttt 40328654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 45640435 - 45640487
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    |||||| | |||||||||||| | | || ||||||||||||||||||||||||    
T  45640435 tggttgcaacaaaagttgtcacatatatagatgttcaaataacacaactcttt 45640487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 48470782 - 48470822
Alignment:
Q  102 caaaagttgtcataaaaatggatgttcaaataacacaactc 142  Q
    |||||||||||| | | ||||||||||||||||||||||||    
T  48470782 caaaagttgtcacatatatggatgttcaaataacacaactc 48470822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 6594 - 6637
Alignment:
Q  143 tttaaaaaagataatggatgagagtaaattcaaatattaaaaaa 186  Q
    |||||||||||||||| |||||||| ||||||||||||||||||    
T  6594 tttaaaaaagataatgcatgagagtgaattcaaatattaaaaaa 6637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 72720 - 72759
Alignment:
Q  147 aaaaagataatggatgagagtaaattcaaatattaaaaaa 186  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  72720 aaaaagataatggatgagagtgaattcaaatattaaaaaa 72759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 16716 - 16676
Alignment:
Q  103 aaaagttgtcataaaaatggatgttcaaataacacaactct 143  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  16716 aaaagttgtcatataaatggatgttcaaataacagaactct 16676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 56128 - 56168
Alignment:
Q  103 aaaagttgtcataaaaatggatgttcaaataacacaactct 143  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  56128 aaaagttgtcatataaatggatgttcaaataacagaactct 56168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 101474 - 101556
Alignment:
Q  153 ataatggatgagagtaaattcaaatattaaaaaatttgtataaaacactatatttattttttggctaccacacaaaatatatcgt 237  Q
    ||||| ||||||||| ||||||||||||||||||  ||||  |||||| |||||||||| |||| |||||| | |||||||||||    
T  101474 ataattgatgagagtgaattcaaatattaaaaaa-gtgtaataaacacaatatttatttattggttaccac-ccaaatatatcgt 101556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 8812 - 8854
Alignment:
Q  103 aaaagttgtcataaaaatggatgttcaaataacacaactcttt 145  Q
    ||||||||||| | | |||||||||||||||||||||||||||    
T  8812 aaaagttgtcagatatatggatgttcaaataacacaactcttt 8854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 76556 - 76498
Alignment:
Q  93 tggttgtatcaaaagttgtcataaaaatggatgttcaaataacacaactctttaaaaaa 151  Q
    |||||||  |||||||||||| | | ||||||||| ||||||||||||||||| |||||    
T  76556 tggttgtcacaaaagttgtcacatatatggatgttaaaataacacaactctttgaaaaa 76498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 145
Target Start/End: Complemental strand, 20814 - 20786
Alignment:
Q  117 aaatggatgttcaaataacacaactcttt 145  Q
    |||||||||||||||||||||||||||||    
T  20814 aaatggatgttcaaataacacaactcttt 20786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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