View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9147_low_28 (Length: 257)
Name: NF9147_low_28
Description: NF9147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9147_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 18860772 - 18860998
Alignment:
| Q |
16 |
tcaataccaacaattagacacacatatagtacatttataccaaatttaaaaaattagggtttatgtcaaaagagggaaataaccataaatttgacaacag |
115 |
Q |
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| T |
18860772 |
tcaataccaacagttagacacacaaatactacatttataccaaattaaaaaaattagggtttatgtcaaaagagggaaataaccataaatttgacaacag |
18860871 |
T |
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| Q |
116 |
tagaatccaagtgtgggtactca----aatgaatgaagaagaagaggatgaagggaacttacgtacgtttctgatgcggcaaaggtggttagattgatgt |
211 |
Q |
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| T |
18860872 |
tagaatccaagtgtgggtactcaaatgaatgaatgaagaagaagaggatgaagggaacttacgtacgtttctgatgcggcaaaggtggttagattgatgc |
18860971 |
T |
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| Q |
212 |
ggcgatattggttcttctccggcggga |
238 |
Q |
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| T |
18860972 |
ggcgatattggttcttctccggcggga |
18860998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 4960174 - 4960230
Alignment:
| Q |
111 |
aacagtagaatccaagtgtgggtactcaaatga--atgaagaagaagaggatgaagg |
165 |
Q |
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| T |
4960174 |
aacactagaatccaagtgtgggtactcaaatgaagaagaagaagaagaggatgaagg |
4960230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 4960045 - 4960079
Alignment:
| Q |
56 |
caaatttaaaaaattagggtttatgtcaaaagagg |
90 |
Q |
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| T |
4960045 |
caaatttaaaaaattagggcttatgtcaaaagagg |
4960079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 22475096 - 22475141
Alignment:
| Q |
48 |
atttataccaaatttaaaaaattagggtttatgtcaaaagagggaa |
93 |
Q |
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| T |
22475096 |
atttttaccaaatttaacaaattatggtttatgtcaaaagtgggaa |
22475141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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