View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9147_low_40 (Length: 227)
Name: NF9147_low_40
Description: NF9147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9147_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 36465036 - 36465224
Alignment:
| Q |
16 |
acctgtgaaaaatattagtatcaaagatgttatcatccagtcaggaaaaatgacattaaaagcaacaccaagactgattccaagcattaacattggttga |
115 |
Q |
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| T |
36465036 |
acctgtgaaaaatattagtatcaaagatgttatcatccagtcaggaaaaatgacattaaaagcaacaccaagactgattccaagcattaacattggttga |
36465135 |
T |
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| Q |
116 |
aaaagaagtgctaaatcatagtcaatcacaggcaggtcaagtgttggatgtctttgcctcaagttgtataaaacagttgctcctgctcc |
204 |
Q |
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| T |
36465136 |
aaaagaagtgctaaatcatagtcaatcacaggcaggtcaagtgttgggtgtctttgcctcaagttgtataaaacagttgctcctgctcc |
36465224 |
T |
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Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 36474218 - 36474402
Alignment:
| Q |
20 |
gtgaaaaatattagtatcaaagatgttatcatccagtcaggaaaaatgacattaaaagcaacaccaagactgattccaagcattaacattggttgaaaaa |
119 |
Q |
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| T |
36474218 |
gtgaaaaatatgattagcaaagttgttaacatccagtcagggaaaatgagattgaaagcaacaccaagactgattccaagcattaacattggttggaaaa |
36474317 |
T |
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| Q |
120 |
gaagtgctaaatcatagtcaatcacaggcaggtcaagtgttggatgtctttgcctcaagttgtataaaacagttgctcctgctcc |
204 |
Q |
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| T |
36474318 |
gaagtgctaaatcatagtcaatcacaggcaggtcaagtgttgggtgtcttttcttcaagttgtataaaacagttgctcctgctcc |
36474402 |
T |
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