View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9147_low_46 (Length: 204)
Name: NF9147_low_46
Description: NF9147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9147_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 6e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 2433531 - 2433698
Alignment:
| Q |
17 |
aaataatgcaatgatgttaattgaaattgaaatccaatgagaataaatcaaatgtacaattactttacttattttgtggatgtaatggtttgaagtcatt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | ||||||||||| |
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| T |
2433531 |
aaataatgcaatgatgttaattgaaattgaaatccaatgagaataaatcaaatgtacaattactttacttattgtgtggatgttgtcgcttgaagtcatt |
2433630 |
T |
|
| Q |
117 |
caagcagatctgtaaaataaatcaacaaatagatttatatttctccatattgatagtgatgtcgctta |
184 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2433631 |
caagcagatctgtaaaataaatcaacaaatagatttatatttctccacattgatagtgatgtcgctta |
2433698 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 4e-43; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 29277777 - 29277944
Alignment:
| Q |
17 |
aaataatgcaatgatgttaattgaaattgaaatccaatgagaataaatc-aaatgtacaattactttacttattttgtggatgtaatggtttgaagtcat |
115 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| || || ||| || | | |||||||||| |
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| T |
29277777 |
aaataatgcaatgatgttaattgagattgaaatccaatgagaataaatcaaaaagtacaattactttactt-ttgtggggacgttgtcgcttgaagtcat |
29277875 |
T |
|
| Q |
116 |
tcaagcagatctgtaaaataaatcaacaaatagatttatatttctccatattgatagtgatgtcgctta |
184 |
Q |
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||||||| | |||| |||||||| |||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
29277876 |
tcaagcatacatgtataataaatctacaaatagatttatatttatccacattgatagtgatgtcgctta |
29277944 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 21257256 - 21257096
Alignment:
| Q |
17 |
aaataatgcaatgatgttaattgaaattgaaatccaatgagaataaatcaaa-tgtacaattactttacttattttgtggatgtaatggtttgaagtcat |
115 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||| | | |||||||||| |
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| T |
21257256 |
aaataattgaatgatgtttattgaaattgaaatccaatgagaataaatcaaaatgtacaattactttacttattatggggatgttttcgcttgaagtcat |
21257157 |
T |
|
| Q |
116 |
tcaagcagatctgtaaaataaatcaacaaatagatttatatttctccatattgatagtgat |
176 |
Q |
| |
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||||||||| ||||| ||||||| |||||||||||||||||| ||| ||||||| |||| |
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|
| T |
21257156 |
tcaagcagacctgtattataaatctacaaatagatttatatttacccacattgatattgat |
21257096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 180
Target Start/End: Original strand, 9032101 - 9032246
Alignment:
| Q |
35 |
aattgaaattgaaatccaatgagaataaatcaaatgtacaattactttacttattttgtggatgtaatggtttgaagtcattcaagcagatctgtaaaat |
134 |
Q |
| |
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||||||||||||||| ||||||||||||||| || |||||||||| ||||||||| || |||||| | ||||||||||||||||||||| ||||| ||| |
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| T |
9032101 |
aattgaaattgaaattcaatgagaataaatcgaaggtacaattacgttacttattgtggggatgttgtcgtttgaagtcattcaagcagacctgtataat |
9032200 |
T |
|
| Q |
135 |
aaatcaacaaatagatttatatttctccatattgatagtgatgtcg |
180 |
Q |
| |
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|||| |||||||||||||||||| |||| |||||| |||||||| |
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|
| T |
9032201 |
aaatttacaaatagatttatatttatccacattgatcatgatgtcg |
9032246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 38677337 - 38677385
Alignment:
| Q |
17 |
aaataatgcaatgatgttaattgaaattgaaatccaatgagaataaatc |
65 |
Q |
| |
|
||||||| |||| |||||||||||||||||| | ||||||||||||||| |
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|
| T |
38677337 |
aaataatacaataatgttaattgaaattgaatttcaatgagaataaatc |
38677385 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 573128 - 572960
Alignment:
| Q |
17 |
aaataatgcaatgatgttaattgaaattgaaatccaatgagaataaatcaaa-tgtacaattactttacttattttgtggatgtaatggtttgaagtcat |
115 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| || |||||| | | |||||||||| |
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| T |
573128 |
aaataatgcaatgatgtttattgaaatcgaaatccaatgaaaataaatcaaaatgtacaattactttacttattgtggggatgttgtcgcttgaagtcat |
573029 |
T |
|
| Q |
116 |
tcaagcagatctgtaaaataaatcaacaaatagatttatatttctccatattgatagtgatgtcgctta |
184 |
Q |
| |
|
||||||||| |||| ||||||| ||| |||||||||||||| ||| ||||||| |||||||||||| |
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| T |
573028 |
tcaagcagacgtgtattataaatctacagatagatttatatttacccacattgatattgatgtcgctta |
572960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 6684888 - 6684959
Alignment:
| Q |
106 |
ttgaagtcattcaagcagatctgtaaaataaatcaacaaatagatttatatttctccatattgatagtgatg |
177 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| |||||||| ||||||||| |||||||||||||||||| |
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| T |
6684888 |
ttgaagtcattcaagcaaatctgtataataaatctacaaatagttttatatttatccatattgatagtgatg |
6684959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 5694220 - 5694172
Alignment:
| Q |
20 |
taatgcaatgatgttaattgaaattgaaatccaatgagaataaatcaaa |
68 |
Q |
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|
|||||||||||||||||||||||||||||| || ||| ||||||||||| |
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|
| T |
5694220 |
taatgcaatgatgttaattgaaattgaaattcattgaaaataaatcaaa |
5694172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 6661724 - 6661677
Alignment:
| Q |
21 |
aatgcaatgatgttaattgaaattgaaatccaatgagaataaatcaaa |
68 |
Q |
| |
|
|||||||||||||||| ||||||| || |||||||||||| ||||||| |
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|
| T |
6661724 |
aatgcaatgatgttaaatgaaattaaattccaatgagaatgaatcaaa |
6661677 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 25636466 - 25636419
Alignment:
| Q |
21 |
aatgcaatgatgttaattgaaattgaaatccaatgagaataaatcaaa |
68 |
Q |
| |
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|||||||||||||||| ||||||| || |||||||||||||||||||| |
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| T |
25636466 |
aatgcaatgatgttaaatgaaattaaattccaatgagaataaatcaaa |
25636419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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