View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9147_low_5 (Length: 572)
Name: NF9147_low_5
Description: NF9147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9147_low_5 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 562
Target Start/End: Original strand, 441566 - 442106
Alignment:
| Q |
18 |
ctttttacggtttgtgttttggtttggcaaatttttctccctcgcacannnnnnngctatcaacttctatatttgttcaatttatattttctcttccatc |
117 |
Q |
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| T |
441566 |
cttttgacggtttgtgttttggtttggcaaatttttctccctcgcacatttttttgctatcaacttctatatttgttcaatttatattttctcttctatc |
441665 |
T |
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| Q |
118 |
gatcctttttcatttgtgactacaaactagaaggtaaataagttttgcggttagttatttgcatatgcatgacgacataaagaatctaaatataggtgaa |
217 |
Q |
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| T |
441666 |
gatcctttttcatttgtgactacaaacaagaaggtaaatgagtttaacggttagttatttgcatatgtatgacaacataaagaatctaaatataggtgaa |
441765 |
T |
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| Q |
218 |
aacaaactgcaaccatattattagtaatgnnnnnnnnnnnctaatataacgatatttatttatttgaggtgaaaacaaactgcctcttcaccattgctct |
317 |
Q |
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| T |
441766 |
aacaaactgcaaccatattattagtaatgaaaaaaa----ctaatataaagatatttatctatttgaggtgaaaacaagctgcctcttcaccattgctct |
441861 |
T |
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| Q |
318 |
tcaggtatgaacatcgactgtcagtttagcgctcgagtttgatcaatttgtgatatggcagccgcgttgatgccactggcgttgcaaaggttgagtcccg |
417 |
Q |
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| | ||| ||||||| ||||||||||||| | || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
441862 |
ttaagtacgaacatcaactgtcagtttagtggtcaagtttgatcaatttttgatatggcagccgcgttgatgccactggcgttgcaaaggttgaatcctg |
441961 |
T |
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| Q |
418 |
ataatcccttacttttgaactcattgtcgtaatggacacgtttatatctacacatggcctcatcgtgcccatggtcttgtgtggcggacaatcagattgt |
517 |
Q |
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| T |
441962 |
ataatcccatacttttgaactcattgtcgtaatggacacgtttatatctacacatggcctcattgtgcccatggtcttgtgtggcggacaatcagattgt |
442061 |
T |
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| Q |
518 |
tccgttgaagcctccacaataatcacaattgttttcacaggttct |
562 |
Q |
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| T |
442062 |
tccgttgaagcctccacaataatcacaattgttttcacagattct |
442106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 28605737 - 28605664
Alignment:
| Q |
171 |
gttatttgcatatgcatgacgacataaagaatctaaatataggtgaaaacaaactgcaaccatattattagtaa |
244 |
Q |
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| T |
28605737 |
gttatttgcatatgcatgacgatgtaaagaatccaaatatatgagaaaacaaactacaaccatatttttagtaa |
28605664 |
T |
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