View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9147_low_6 (Length: 528)
Name: NF9147_low_6
Description: NF9147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9147_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 16 - 514
Target Start/End: Complemental strand, 33445387 - 33444889
Alignment:
| Q |
16 |
atactcatcggctgtcattcaaaactagaaaagaatctcaatgccttatgatcaccaaaacaagaaggaaggaaatcatcgctaattcaaacagggccta |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33445387 |
atactcatcggctgtcattcaaaactagaaaagaatctcaatgccttatgatcaccaaaactagaaggaaggaaatcatcgctaattcaaacagggccta |
33445288 |
T |
|
| Q |
116 |
aacattttataacatattttacctggccaagcatggctgcctctgcttcaatacccccaacaccccatccagcaattcccaacccatcaatcattggtgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33445287 |
aacattttataacatattttacctggccaagcatggctgcctctgcttcaatacccccaacaccccatccagcaattcccaacccatcaatcattggtgt |
33445188 |
T |
|
| Q |
216 |
gtgggagtccgtaccgatcacactgtcagggtagagaatgccatcgttgttaaaaactactcttccaaggtattcaagatttacctaaaaattcaataga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33445187 |
gtgggagtccgtaccgatcacactgtcagggtagagaatgccgtcgttgttaaaaactactcttccaaggtattcaagatttacctaaaaattcaataga |
33445088 |
T |
|
| Q |
316 |
atgtcatagtataagtccatttataacttacattttgtagtggttaacaagtttatgagcaagattttcattttaagcaatggtatctacctggtggact |
415 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33445087 |
atgtcttagtataagtccatttataacttacattttgtagtggttaacaagtttatgaacaagattttcattttaagcaatggtatctacctggtggact |
33444988 |
T |
|
| Q |
416 |
attccagatccaggaggaacaacaagtgtgttatcgaaagcagatgaaccccatttaaggaaaccaaatctctctttattcctttggaactcaaattct |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33444987 |
attccagatccaggaggaacaacaagtgtgttatcgaaagcagatgaaccccatttaaggaaaccaaatctctctttattcctttggaactcaaattct |
33444889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 135 - 301
Target Start/End: Complemental strand, 37234140 - 37233974
Alignment:
| Q |
135 |
tacctggccaagcatggctgcctctgcttcaatacccccaacaccccatccagcaattcccaacccatcaatcattggtgtgtgggagtccgtaccgatc |
234 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||| | ||| ||||| || || || | | |
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| T |
37234140 |
tacctggccaagcattgctgcctctgcttcaatacccccaacaccccatccagcgactccaagcccatcaatcatagttgtatgggaatcagtcccaacc |
37234041 |
T |
|
| Q |
235 |
acactgtcagggtagagaatgccatcgttgttaaaaactactcttccaaggtattcaagatttacct |
301 |
Q |
| |
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||||||||||| ||||| | || |||||||| ||||| |||| |||||| ||||||||||| |||| |
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| T |
37234040 |
acactgtcaggatagagtaatccctcgttgttgaaaacaactcgtccaagatattcaagattgacct |
37233974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 135 - 301
Target Start/End: Original strand, 28311054 - 28311220
Alignment:
| Q |
135 |
tacctggccaagcatggctgcctctgcttcaatacccccaacaccccatccagcaattcccaacccatcaatcattggtgtgtgggagtccgtaccgatc |
234 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||| | ||| | |||||||||||| | ||| ||||| || || || | | |
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| T |
28311054 |
tacctggccaagcattgatgcctctgcttcaatacccccaacaccccatccagcgactccaagcccatcaatcatagttgtatgggaatcagtcccaacc |
28311153 |
T |
|
| Q |
235 |
acactgtcagggtagagaatgccatcgttgttaaaaactactcttccaaggtattcaagatttacct |
301 |
Q |
| |
|
||||||||||| ||||| | || |||||||| ||||| |||| |||||| ||||||||||| |||| |
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| T |
28311154 |
acactgtcaggatagagtaatccctcgttgttgaaaacaactcgtccaagatattcaagattgacct |
28311220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 135 - 301
Target Start/End: Original strand, 17042009 - 17042175
Alignment:
| Q |
135 |
tacctggccaagcatggctgcctctgcttcaatacccccaacaccccatccagcaattcccaacccatcaatcattggtgtgtgggagtccgtaccgatc |
234 |
Q |
| |
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|||||| |||||||| |||||||| ||||| ||||| ||||||||||||||||||| || | |||||| ||||| | ||| || || || || || | | |
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| T |
17042009 |
tacctgaccaagcattgctgcctcagcttcgatacctccaacaccccatccagcaacaccaagcccatctatcatagttgtatgtgaatcagtcccaacc |
17042108 |
T |
|
| Q |
235 |
acactgtcagggtagagaatgccatcgttgttaaaaactactcttccaaggtattcaagatttacct |
301 |
Q |
| |
|
||||||||||| ||||| | ||| || ||||| |||||||| | |||||| ||||||||||| |||| |
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|
| T |
17042109 |
acactgtcaggatagagtaagccctcattgttgaaaactacccgtccaagatattcaagattgacct |
17042175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 489
Target Start/End: Original strand, 17042271 - 17042357
Alignment:
| Q |
403 |
tacctggtggactattccagatccaggaggaacaacaagtgtgttatcgaaagcagatgaaccccatttaaggaaaccaaatctctc |
489 |
Q |
| |
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|||||| || ||||| ||||| |||||||||||||| || ||||| ||| |||| ||| ||||||||||| ||| |||||||||| |
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| T |
17042271 |
tacctgatgtactataccagaaccaggaggaacaacgagcatgttacggaatgcagttgatccccatttaagaaaagcaaatctctc |
17042357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 404 - 509
Target Start/End: Complemental strand, 9093331 - 9093226
Alignment:
| Q |
404 |
acctggtggactattccagatccaggaggaacaacaagtgtgttatcgaaagcagatgaaccccatttaaggaaaccaaatctctctttattcctttgga |
503 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||||| |||| | ||| ||| |||||||||||| |||||||||||||| || || ||||| |||| |
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| T |
9093331 |
acctgatggactattcctgatccaggaggaacaacaagcatgttgttgaacgcatttgaaccccatttgaggaaaccaaatctttccttgttcctctgga |
9093232 |
T |
|
| Q |
504 |
actcaa |
509 |
Q |
| |
|
| |||| |
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|
| T |
9093231 |
attcaa |
9093226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 9093638 - 9093552
Alignment:
| Q |
132 |
ttttacctggccaagcatggctgcctctgcttcaatacccccaacaccccatccagcaattcccaacccatcaatcattggtgtgtg |
218 |
Q |
| |
|
|||||||||||||||||| || || || |||||||| || ||||| ||||| ||||||| ||||| ||||||||||| | |||||| |
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| T |
9093638 |
ttttacctggccaagcattgcagcttcggcttcaattccaccaactccccacccagcaacacccaagccatcaatcatagttgtgtg |
9093552 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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