View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9148_high_3 (Length: 591)
Name: NF9148_high_3
Description: NF9148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9148_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 443; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 42 - 581
Target Start/End: Complemental strand, 8325157 - 8324626
Alignment:
| Q |
42 |
tatataatatattatgtgattttttatttaaaagcaattacttaannnnnnnnnnccacaacagttagatatcatgtttagcaatgctggaattgcaagt |
141 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
8325157 |
tatataatatattttgtgattttttatttaaaagcaatttttt--------ttttccacaacaggtagatatcatgtttagcaatgctgggattgcaagt |
8325066 |
T |
|
| Q |
142 |
ccatctgatcagactgtgttggaattcgacatttctcaagctgaccatttgttctcagttaacgttcgaggaatggcattgtgcgtgaaacatgcggcac |
241 |
Q |
| |
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||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8325065 |
ccatctgatcaaactgtgttggaatttgatatttctcaagctgatcatttgttctcagttaacgttcgaggaatggcattgtgcgtgaaacatgcggcac |
8324966 |
T |
|
| Q |
242 |
gtgcgatggtggacgggtgcgcgaggggtagcattgtgtgcactgctagcgttgccggtagcaacggtagcatgaagttaacagattacgtaatgtcgaa |
341 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8324965 |
gtgcgatggtggacgggtgcgtgaggggtagcattgtgtgcactgctagcgttgccggtagcaacggtagcatgaagttaacagattacgtaatgtcgaa |
8324866 |
T |
|
| Q |
342 |
gcacgcaataatagggttgatgcgttcagctagtaagcaacttgcaaagcatggaataagggtgaattgtgtctcaccaaatggattagcaacaccattg |
441 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8324865 |
gcacgcaataatagggttgatgcgttcggctagtaagcaacttgcaaagcatggaataagggtgaattgtgtctcaccaaatggattagcaacaccattg |
8324766 |
T |
|
| Q |
442 |
actatgaagttgctagatgcgggtgaagagacagttgatttgatttttggagaatacaagaggttggaaggagtggttctcaacactaaacatgttgcag |
541 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8324765 |
actatgaaattgctagatgcgggtgaagagacagttgatttgatttttggagaatacaagaggttggaaggagtggttctcaacactaaacatgtggcag |
8324666 |
T |
|
| Q |
542 |
atgctgtgttgttcttggtatccaatgaatctgactttgt |
581 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||| |
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| T |
8324665 |
atgctgttttgttcttggtatccaatgaatctgactttgt |
8324626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 97 - 582
Target Start/End: Complemental strand, 8262118 - 8261633
Alignment:
| Q |
97 |
ccacaacagttagatatcatgtttagcaatgctggaattgcaagtccatctgatcagactgtgttggaattcgacatttctcaagctgaccatttgttct |
196 |
Q |
| |
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||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| | |||||| |||||||||||||||| |||||| |||| |
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| T |
8262118 |
ccacaacagatagatattatgtttagcaatgctgggattgcaagtccatctgatcagactattttggaactcgacatttctcaagccgaccatgtgtttg |
8262019 |
T |
|
| Q |
197 |
cagttaacgttcgaggaatggcattgtgcgtgaaacatgcggcacgtgcgatggtggacgggtgcgcgaggggtagcattgtgtgcactgctagcgttgc |
296 |
Q |
| |
|
|||||||| ||||||||| | ||||||| |||||| | |||||||||||||||||||| ||| ||| ||||||||||||||||||||| || ||||| |
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|
| T |
8262018 |
cagttaacattcgaggaacgacattgtgtgtgaaatacgcggcacgtgcgatggtggaggggcgcgtgaggggtagcattgtgtgcacagcgagcgtatt |
8261919 |
T |
|
| Q |
297 |
cggtagcaacggtagcatgaagttaacagattacgtaatgtcgaagcacgcaataatagggttgatgcgttcagctagtaagcaacttgcaaagcatgga |
396 |
Q |
| |
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|||||| | ||| | ||| |||||| |||||| ||| |||||||| |||||||||||||||||||| ||||| ||| |||||||||||| | || |
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| T |
8261918 |
gggtagccaaggtgtcttgaggttaaccgattacacaatatcgaagcatgcaataatagggttgatgcgctcagcgagtgtgcaacttgcaaaatacggg |
8261819 |
T |
|
| Q |
397 |
ataagggtgaattgtgtctcaccaaatggattagcaacaccattgactatgaagttgctagatgcgggtgaagagacagttgatttgatttttggagaat |
496 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| ||| || ||| ||||||| || ||||||| || | || |
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| T |
8261818 |
ataagagtgaattgtgtctcgccaaatggattagcaacaccattgactatgaaattgttaggggcaagtgctaagacagtcgagttgatttatgaacaaa |
8261719 |
T |
|
| Q |
497 |
acaagaggttggaaggagtggttctcaacactaaacatgttgcagatgctgtgttgttcttggtatccaatgaatctgactttgtc |
582 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
8261718 |
acaagaggttggaaggagtggttctcaacactaaacatgttgcagatgctgtgttgttcttggtatctaatgaatctgactttgtc |
8261633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 110 - 551
Target Start/End: Complemental strand, 8312356 - 8311917
Alignment:
| Q |
110 |
atatcatgtttagcaatgctggaattgcaagtccatctgatcagactgtgttggaattcgacatttctcaagctgaccatttgttctcagttaacgttcg |
209 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||||||||||||| |||||| | |||||| ||||||||||||||||||||||||| |||||| |||| | || |
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|
| T |
8312356 |
atattatgtttagcaatgttgggattgcaagtccatctgaccagactattttggaactcgacatttctcaagctgaccatttattctcaattaatatccg |
8312257 |
T |
|
| Q |
210 |
aggaatggcattgtgcgtgaaacatgcggcacgtgcgatggtggacgggtgcgcgaggggtagcattgtgtgcactgctagcgttgccggtagcaacggt |
309 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| ||||| ||||| || || |||||| ||||| |
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|
| T |
8312256 |
aggaatggcattgtgcgtgaaacatgcagcacgttcgatggtgga-----------ggggtagcattgtatgcacggctagtgtcgctggtagccacggt |
8312168 |
T |
|
| Q |
310 |
agcatgaagttaacagattacgtaatgtcgaagcacgcaata--atagggttgatgcgttcagctagtaagcaacttgcaaagcatggaataagggtgaa |
407 |
Q |
| |
|
| |||||||||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8312167 |
ggagtgaagttaaccgattacgtaaagtcgaagcacgcaatattataggcttgatgcgttcagctagtgtgcaacttgcaaagcatggaataagggtgaa |
8312068 |
T |
|
| Q |
408 |
ttgtgtctcaccaaatggattagcaacaccattgactatg-aagttgctagatgcgggtgaagagac-------agttgatttgatttttggagaataca |
499 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||| ||| || ||||||||||| |||| |||||| ||||||| | |||| ||||||||||| |
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|
| T |
8312067 |
ttttgtatcaccaaatggattagcaacaccattgac-atgtaaattgctagatgcaggtgcagagacagagacaagttgatctaatttatggagaataca |
8311969 |
T |
|
| Q |
500 |
agaggttggaaggagtggttctcaacactaaacatgttgcagatgctgtgtt |
551 |
Q |
| |
|
||||||||| |||||||||||||| || ||||| || |||||||||||||| |
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|
| T |
8311968 |
agaggttggtaggagtggttctcacaaccaaacaagtagcagatgctgtgtt |
8311917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 98 - 284
Target Start/End: Complemental strand, 8289931 - 8289745
Alignment:
| Q |
98 |
cacaacagttagatatcatgtttagcaatgctggaattgcaagtccatctgatcagactgtgttggaattcgacatttctcaagctgaccatttgttctc |
197 |
Q |
| |
|
|||| ||| ||||||| ||||| | |||||| ||||| |||||| | ||||| ||||||||| || ||||||| || ||| |||| ||| ||| | |
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|
| T |
8289931 |
cacaccaggtagatataatgttcaccaatgccggaatctttagtccaaccgatcaaactgtgttgaaactcgacatgtcccaactagaccgtttattcac |
8289832 |
T |
|
| Q |
198 |
agttaacgttcgaggaatggcattgtgcgtgaaacatgcggcacgtgcgatggtggacgggtgcgcgaggggtagcattgtgtgcac |
284 |
Q |
| |
|
| | || |||||||||||||||||||| ||||||||||| |||| ||| |||||||| ||| || ||||| || ||||||||||| |
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|
| T |
8289831 |
aatcaatgttcgaggaatggcattgtgtgtgaaacatgccgcacatgctatggtggaggggcgcattagggggagtattgtgtgcac |
8289745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 8259422 - 8259343
Alignment:
| Q |
205 |
gttcgaggaatggcattgtgcgtgaaacatgcggcacgtgcgatggtggacgggtgcgcgaggggtagcattgtgtgcac |
284 |
Q |
| |
|
||||| || ||||||||||| |||||||| ||||| ||||| |||||||| || ||| |||||| |||||||||||||| |
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|
| T |
8259422 |
gttcgtgggatggcattgtgtgtgaaacacgcggcgcgtgcaatggtggagggtagcgtgagggggagcattgtgtgcac |
8259343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 8257219 - 8257065
Alignment:
| Q |
100 |
caacagttagatatcatgtttagcaatgctggaattgcaagtccatctgatcagactgtgttggaattcgacatttctcaagctgaccatttgttctcag |
199 |
Q |
| |
|
|||||| ||||||| ||||| |||||||||||||| || ||||| ||||||| || | ||||| | ||||| || ||| ||||| ||| || | | |
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|
| T |
8257219 |
caacaggtagatataatgttcagcaatgctggaatcgctagtcccactgatcaaacaatcatggaacttgacatgtcccaatttgaccgtttatttgcgg |
8257120 |
T |
|
| Q |
200 |
ttaacgttcgaggaatggcattgtgcgtgaaacatgcggcacgtgcgatggtgga |
254 |
Q |
| |
|
| || |||| ||||||||| ||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
8257119 |
tcaatgttcaaggaatggcgttgtgtgtgaaacatgcagcacgtgcaatggtgga |
8257065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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