View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9148_high_4 (Length: 588)
Name: NF9148_high_4
Description: NF9148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9148_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 19423530 - 19423300
Alignment:
| Q |
11 |
agataatactatcaaagttcatctatggcaaggtgctgatgataagctagtccccgctacactgcaacgatatattgttgaaaaacttccgtggattcaa |
110 |
Q |
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| T |
19423530 |
agataatacaatcaaagttcatctatggcaaggtgctgatgataagctagtccccgctacgctgcaacgatatattgttcaaaaacttccgtggattcaa |
19423431 |
T |
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| Q |
111 |
taccatgaattgcaaggtgctggtcacttgtttccaaatgtcgaggaagtgagtgcagaaatcctcaaaacacagttgatggatacgaaatagggctcga |
210 |
Q |
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| T |
19423430 |
taccatgaattgcaaggtgctggtcacttgtttccaaatgtcgaggaagtgagtgcagagatcctcaaaacacagttgatggatacgaaatagtgcacga |
19423331 |
T |
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| Q |
211 |
agttaagctaccgttgttaatttcggtattt |
241 |
Q |
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| T |
19423330 |
agttaagctaccgttgttaattttggtattt |
19423300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 318 - 473
Target Start/End: Complemental strand, 19423300 - 19423157
Alignment:
| Q |
318 |
tagtgttttgcgcccttagaagtgcaaattggaagtgacattttactgttaacatttaccaaaatttgaaattacaaacatatgtactaaagttcaactt |
417 |
Q |
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| T |
19423300 |
tagtgttttgcgcccttaaaagtgcaaattggaagtgacattttactattaacatttaccaaaatttgaa---acaaacatatgtactaaagttcaactt |
19423204 |
T |
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| Q |
418 |
aaaacatgaacctatacatttataatccagtattgcatacacaattattatgctca |
473 |
Q |
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| T |
19423203 |
---------acctatacatttataatccagtattgcatacacaattattatgctca |
19423157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 506 - 561
Target Start/End: Complemental strand, 19434024 - 19433969
Alignment:
| Q |
506 |
agcacaactagctagcttactatctcaaagtttataatacaagagtgacaaatttt |
561 |
Q |
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| T |
19434024 |
agcacaactagctagctgactatctctaagtttataatagaagagtgacaaatttt |
19433969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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