View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9148_low_10 (Length: 530)
Name: NF9148_low_10
Description: NF9148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9148_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 325 - 518
Target Start/End: Complemental strand, 4092873 - 4092680
Alignment:
| Q |
325 |
atatcgatgtatcgctgcagcatcgtatctcgtatttcgaaggttaggggctgggtgaggatgtttaaggggttcttgtaagggtcttatgggggtactt |
424 |
Q |
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| T |
4092873 |
atatcgatgtatcgatgcagcatcgtatctcgtatttcgaaggttaggggctgggtgagaatgtttaaggggttcttgtaagggtcttatgggggtactt |
4092774 |
T |
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| Q |
425 |
ttgagtcataataaagagtgttgtgggtgattgaatatatacattaagagcacgtaatccatccacttcctacctaggtaattatatgatatct |
518 |
Q |
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| T |
4092773 |
ttgagtcataataaagagtgttgtgggtgattgaatatatacattaagagcacgtaatccatccacttcctacctaggtaattatatgatatct |
4092680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 4093180 - 4093057
Alignment:
| Q |
19 |
gttatactaaacatatcatcaaaatacactaaagtcatcaaatctcaatgtccgctaagtattttccgtgtttcttctgtttgatttagaaagatgatat |
118 |
Q |
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| T |
4093180 |
gttatactaaacatatcatcaaaatacactaaagtcatcaaatctcaatgtcagctaagtattttccgtgtttcttctgtttgatttagaaagatgatat |
4093081 |
T |
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| Q |
119 |
atatggttttgggatatgggagtg |
142 |
Q |
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| T |
4093080 |
atatggttttgggatatgggagtg |
4093057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 2466066 - 2465953
Alignment:
| Q |
25 |
ctaaacatatcatcaaaatacactaaagtcatcaaatctcaatgtccgctaagtattttccgtgtttcttctgtttgatttagaaagatgatatatatgg |
124 |
Q |
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| T |
2466066 |
ctaaacatatcatcaaaatatactaaagtcatcaaatctcaatgtcacctaagtattttccgtgtttcttctgtttggtt----aagatgatatatatgg |
2465971 |
T |
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| Q |
125 |
ttttgggatatgggagtg |
142 |
Q |
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| T |
2465970 |
ttttgggatttgggagtg |
2465953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 518
Target Start/End: Complemental strand, 4083024 - 4082987
Alignment:
| Q |
481 |
atccatccacttcctacctaggtaattatatgatatct |
518 |
Q |
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| T |
4083024 |
atccatccatttcctacctaggtaattatatgatatct |
4082987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 25164054 - 25164098
Alignment:
| Q |
40 |
aaatacactaaagtcatcaaatctcaatgtccgctaagtattttc |
84 |
Q |
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| T |
25164054 |
aaatatactaaagtcatcaaacctcaatgtcatctaagtattttc |
25164098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 24566408 - 24566460
Alignment:
| Q |
34 |
tcatcaaaatacactaaagtcatcaaatctcaatgtccgctaagtattttccg |
86 |
Q |
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||||||||||||||||| || |||||| ||||||||| | |||||||||||| |
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| T |
24566408 |
tcatcaaaatacactaatgtaatcaaaactcaatgtcatccaagtattttccg |
24566460 |
T |
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