View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9148_low_13 (Length: 423)
Name: NF9148_low_13
Description: NF9148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9148_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 406
Target Start/End: Complemental strand, 14176563 - 14176172
Alignment:
| Q |
17 |
atacttaggttaaaatagggggtctctattgctcaatttgtttggcatcagctgctacctgtacatgtcgagagatgtttccatatgcggcagtggagga |
116 |
Q |
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| T |
14176563 |
atacttaggttaaaatagggggtctctattgctcaatttgtttggcatcagctgctacctgtacatgtcgagagatgtttccatatgcggcagtggagga |
14176464 |
T |
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| Q |
117 |
acttggaagtgcatgatgacaatttttcttgaccggttgtataacaccccatgttgatttatctagaatatcaataggagcatatataatggatccggat |
216 |
Q |
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| T |
14176463 |
acttggaagtgcatgatgacaatttttcttgaccggttgtataacaccccatgttgatttatctagaatatcaataggagcatatataatggatccgaat |
14176364 |
T |
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| Q |
217 |
aaattaaaattacagaactttattcgaataatgcactaagtacatcacactaatttagtacca--cacaacggaaaacaactaggaaagtctaaacaagt |
314 |
Q |
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| T |
14176363 |
acattaaaattacagaactttattcgaataatgcactaagtacatcacactaatttagtaccacacacaacggaaaacaactaggaaagtctaaacaagt |
14176264 |
T |
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| Q |
315 |
taaacaatacaaggaagaaactatcaacatagtcatataaactattcaagctctaagcctcagtgagttcttactccatctagggtgttagt |
406 |
Q |
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| T |
14176263 |
taaacagtacaaggaagaaactatcaacatagtcatataaactattcaagctctaagcctcagtgagttcttactccacctagggtgttagt |
14176172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 3071260 - 3071211
Alignment:
| Q |
156 |
tataacaccccatgttgatttatctagaatatcaataggagcatatataa |
205 |
Q |
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| T |
3071260 |
tataacaccccatattgatttatctagaatatcaacaggagcatacataa |
3071211 |
T |
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